Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0633
         (417 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03040 Cluster: Regulatory protein cro; n=14; root|Rep:...   138   4e-32
UniRef50_Q87Y09 Cluster: Regulatory protein Cro; n=1; Pseudomona...    57   1e-07
UniRef50_Q5QF79 Cluster: Cro-like protein; n=2; root|Rep: Cro-li...    55   7e-07
UniRef50_A6STU3 Cluster: Prophage Pfl 6 Cro repressor; n=1; Pseu...    53   3e-06
UniRef50_P03034 Cluster: Repressor protein CI; n=13; root|Rep: R...    43   0.003
UniRef50_A6L1C7 Cluster: Carbohydrate esterase family 8; n=2; Ba...    33   1.8  
UniRef50_Q2SLN0 Cluster: Putative uncharacterized protein; n=1; ...    32   4.1  
UniRef50_P16814 Cluster: Uncharacterized protein UL41; n=1; Huma...    31   7.2  
UniRef50_Q5FFB7 Cluster: Apolipoprotein N-acyltransferase; n=5; ...    31   9.6  

>UniRef50_P03040 Cluster: Regulatory protein cro; n=14; root|Rep:
           Regulatory protein cro - Bacteriophage lambda
          Length = 66

 Score =  138 bits (334), Expect = 4e-32
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = -3

Query: 244 MEQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPS 65
           MEQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPS
Sbjct: 1   MEQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPS 60

Query: 64  NKKTTA 47
           NKKTTA
Sbjct: 61  NKKTTA 66


>UniRef50_Q87Y09 Cluster: Regulatory protein Cro; n=1; Pseudomonas
           syringae pv. tomato|Rep: Regulatory protein Cro -
           Pseudomonas syringae pv. tomato
          Length = 76

 Score = 57.2 bits (132), Expect = 1e-07
 Identities = 25/58 (43%), Positives = 40/58 (68%)
 Frame = -3

Query: 238 QRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPS 65
           +RI+L D+  + GQ + A+ LG   ++I KA+ A R I ++++ DGS  A+EV+PFPS
Sbjct: 2   ERISLSDFVTKIGQARVARALGCKPASIAKALKARRNIEVSVDTDGSCIAQEVRPFPS 59


>UniRef50_Q5QF79 Cluster: Cro-like protein; n=2; root|Rep: Cro-like
           protein - Pseudomonas phage F116
          Length = 66

 Score = 54.8 bits (126), Expect = 7e-07
 Identities = 29/60 (48%), Positives = 38/60 (63%)
 Frame = -3

Query: 238 QRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPSNK 59
           Q I + ++    GQ K A+ LGV Q AI+KA+ AGRKI +    DGS  AEEV+ FP+ K
Sbjct: 2   QIIPINEFVAEQGQAKAAELLGVTQGAISKALRAGRKINVYRCEDGSYSAEEVRAFPAQK 61


>UniRef50_A6STU3 Cluster: Prophage Pfl 6 Cro repressor; n=1;
           Pseudomonas fluorescens Pf-5|Rep: Prophage Pfl 6 Cro
           repressor - Pseudomonas fluorescens (strain Pf-5 / ATCC
           BAA-477)
          Length = 67

 Score = 52.8 bits (121), Expect = 3e-06
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = -3

Query: 238 QRITLKDYAMRFG-QTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPSN 62
           ++I L  Y    G Q+  A  LGV QSAI++ + AGR I +T+  DG V A E++P P+ 
Sbjct: 2   KKIPLSKYLEEHGTQSALAAALGVNQSAISQMVRAGRSIEITLYEDGRVEANEIRPIPAR 61

Query: 61  KKTTA 47
            K TA
Sbjct: 62  PKRTA 66


>UniRef50_P03034 Cluster: Repressor protein CI; n=13; root|Rep:
           Repressor protein CI - Bacteriophage lambda
          Length = 237

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +2

Query: 344 MSTKXKPLTQEQLEDARRLKA 406
           MSTK KPLTQEQLEDARRLKA
Sbjct: 1   MSTKKKPLTQEQLEDARRLKA 21


>UniRef50_A6L1C7 Cluster: Carbohydrate esterase family 8; n=2;
           Bacteroides|Rep: Carbohydrate esterase family 8 -
           Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC
           11154)
          Length = 574

 Score = 33.5 bits (73), Expect = 1.8
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 268 WLHVLGGCMEQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFL 119
           W HVLGG   + I ++++A     +K+  D G+++  INK +  G  +F+
Sbjct: 47  WGHVLGGYFSENIRVENHARNGRSSKSFIDEGLWEVVINK-VKPGDYVFI 95


>UniRef50_Q2SLN0 Cluster: Putative uncharacterized protein; n=1;
           Hahella chejuensis KCTC 2396|Rep: Putative
           uncharacterized protein - Hahella chejuensis (strain
           KCTC 2396)
          Length = 762

 Score = 32.3 bits (70), Expect = 4.1
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 223 KDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADG--SVYAEEVK 77
           K Y +R+G ++   D  +Y       + AG ++ L +  DG  S+Y+ +++
Sbjct: 348 KTYLIRWGDSRQVVDYRIYPGVAKALVDAGNQVALVVGDDGETSIYSYDIR 398


>UniRef50_P16814 Cluster: Uncharacterized protein UL41; n=1; Human
           herpesvirus 5 strain AD169|Rep: Uncharacterized protein
           UL41 - Human cytomegalovirus (strain AD169) (HHV-5)
           (Human herpesvirus 5)
          Length = 141

 Score = 31.5 bits (68), Expect = 7.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 4   CPFSGLECVRAGLFMLLFFCYSGRALPLPHKRFHQRL 114
           C +  +  +R GL+ +LFF ++     LPH++ H+RL
Sbjct: 5   CCYGIITTLRPGLWCVLFFVHARHDTLLPHRQQHRRL 41


>UniRef50_Q5FFB7 Cluster: Apolipoprotein N-acyltransferase; n=5;
           canis group|Rep: Apolipoprotein N-acyltransferase -
           Ehrlichia ruminantium (strain Gardel)
          Length = 506

 Score = 31.1 bits (67), Expect = 9.6
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -2

Query: 362 VSFLCSYVKSITARDKYLTPCVLTILPLAVIMVACTRRL 246
           ++ LCS    ++ +DK + PC++T++ L  + +  + RL
Sbjct: 169 LAVLCSAAVGVSIQDKCILPCIITLITLVSMYIYGSNRL 207


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,011,477
Number of Sequences: 1657284
Number of extensions: 7562621
Number of successful extensions: 14999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14999
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19465676618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)