Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0633
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    26   2.7  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    26   2.7  

>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 208 ALHNLSGLCVVPYNLL 255
           A+  LSGLC++P+ LL
Sbjct: 86  AISALSGLCIIPFTLL 101


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -2

Query: 383 QAALVLMVSFLCSYVKSITARDKYLTPCVLTILPLAVI 270
           +  ++++V  +CSY+  + A+ +++TP     +    I
Sbjct: 2   KTTMLMLVLLVCSYIHYVCAQIRFVTPATTDSMDFTAI 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,218
Number of Sequences: 5004
Number of extensions: 31615
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)