Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0633
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0017 - 10649527-10651183,10651264-10652363                       30   0.65 
06_03_1110 - 27676172-27676522,27676608-27676703,27676845-276769...    29   2.0  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    28   2.6  
02_03_0053 - 14475106-14475126,14475171-14475512,14475969-144760...    28   3.5  
08_02_1172 + 24898290-24899141,24900864-24901328                       27   8.0  
07_01_1029 - 8902771-8902805,8903135-8903256,8904097-8904425,890...    27   8.0  

>06_02_0017 - 10649527-10651183,10651264-10652363
          Length = 918

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 380 AALVLMVSFLCSYVKSITARDKYLTPCVLTILPLAVIMVACT 255
           A L+ M+  LC+Y    T R +     +  ++P+ V M ACT
Sbjct: 853 AILLDMLGLLCAYAAGSTMRWETSRNIIALVIPVLVYMAACT 894


>06_03_1110 -
           27676172-27676522,27676608-27676703,27676845-27676976,
           27677518-27677622,27677946-27678119,27678361-27678430,
           27678515-27678696,27678974-27679083,27679360-27679464,
           27679570-27679648,27679808-27679848,27679931-27680009,
           27680364-27680492
          Length = 550

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 217 NLSGLCVVPYNLLVHATIITARGKIVNTHGVR 312
           +L G  V+P+NL +H+ ++ +R    + HG++
Sbjct: 234 SLLGAMVMPHNLFLHSALVLSRKVPRSVHGIK 265


>02_03_0026 -
           14045653-14045874,14047023-14047215,14047518-14047618,
           14050145-14050272,14050409-14050502,14050749-14051237,
           14052622-14052915,14053602-14053732,14053829-14055440,
           14055539-14055651,14055902-14056933,14057023-14057145,
           14057250-14057688
          Length = 1656

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 175 GVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPSNKKTT 50
           G+Y + +   +H     ++T N DG++  E+V   PS+ +TT
Sbjct: 876 GIYPAVLQLQLHLPNMQYVTYNEDGNL--EDVVNRPSSSRTT 915


>02_03_0053 -
           14475106-14475126,14475171-14475512,14475969-14476099,
           14476198-14477230,14477495-14477702,14477761-14477807,
           14477906-14477971,14478644-14478804,14478985-14479118,
           14479244-14479452
          Length = 783

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 175 GVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPSNKKTT 50
           G+Y + +   +H     ++T N DG++  E+V   PS+ +TT
Sbjct: 389 GIYPAVLQLQLHLPNMQYVTYNEDGNL--EDVVNRPSSTRTT 428


>08_02_1172 + 24898290-24899141,24900864-24901328
          Length = 438

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 268 WLHVLGGCMEQRITLKDYAMRFGQTKTAKDLGVYQSAINKA 146
           W  + G   + + +LKD+A  FG   TA D      A++ A
Sbjct: 378 WYCLCGSEFKHKRSLKDHARAFGHAHTALDADDDDGAVSDA 418


>07_01_1029 -
           8902771-8902805,8903135-8903256,8904097-8904425,
           8905435-8905530,8906126-8906257,8907244-8907348,
           8907630-8907803,8908094-8908163,8908263-8908444,
           8908669-8908778,8909778-8909882,8909965-8910043,
           8910342-8910382,8910511-8910589,8910856-8910966
          Length = 589

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 220 LSGLCVVPYNLLVHATIITARGKIVNTHGVR 312
           L G  V+P+NL +H+ ++ +R    +  G++
Sbjct: 229 LLGALVMPHNLFLHSALVLSRKTPASVRGIK 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,908,263
Number of Sequences: 37544
Number of extensions: 213197
Number of successful extensions: 408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)