Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0633
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              28   3.6  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                28   3.6  
SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)       27   4.7  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   4.7  
SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)         27   6.2  
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)                     27   8.2  

>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 190 SWFAQSALHNLSGLCVVPYNLLVHATIITARGKIVNTHGVRYLSLAVXDLTY 345
           +W   ++  + S L  V   +L+H  + ++R  I +T+  R L  +  DL Y
Sbjct: 202 TWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLFYSQLDLQY 253


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 190 SWFAQSALHNLSGLCVVPYNLLVHATIITARGKIVNTHGVRYLSLAVXDLTY 345
           +W   ++  + S L  V   +L+H  + ++R  I +T+  R L  +  DL Y
Sbjct: 140 TWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLFYSQLDLQY 191


>SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)
          Length = 456

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 253 LVHATIITARGKIVNTHGVRYLSLAVXDLTYEHKXETINTRA 378
           ++H  I+  + KI N     +  L + D  Y H  + +  RA
Sbjct: 235 VIHRVILDTKDKIENDPHDTFADLVIYDFLYSHSSKELEKRA 276


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 199 QTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFP 68
           Q    KDL  Y+SA+ +     +++F  +       A+E++ FP
Sbjct: 72  QVVNGKDLKEYESAVQEVYDDAKRVFSYLKEAKKQRAKEIQVFP 115


>SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)
          Length = 618

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 196 FAQSALHNLSGLCVVPYNLLVHATIITARGKIVNTHGV 309
           F +S LHNLS   + PY    HA +  +  + ++  GV
Sbjct: 320 FPRSWLHNLSSCTISPYLYSDHAFVCASLPRQISFRGV 357


>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
          Length = 1617

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 168 YTPRSLAVLVCPKRIA*SFRVMRCSIQP 251
           Y P+ L + VCP R + SF  MR S  P
Sbjct: 210 YWPQQLNLAVCPGRSSPSFLTMRLSPLP 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,599,909
Number of Sequences: 59808
Number of extensions: 241174
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)