Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0633
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045643-6|AAC02593.2|  570|Caenorhabditis elegans Hypothetical ...    31   0.44 
AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z81091-6|CAE17821.2|  306|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z75952-8|CAH10792.1|  306|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AL132860-10|CAB60525.1|  615|Caenorhabditis elegans Hypothetical...    26   9.5  
AL132860-9|CAB60524.1|  647|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AF045643-6|AAC02593.2|  570|Caenorhabditis elegans Hypothetical
           protein F58H7.2 protein.
          Length = 570

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 305 PCVLTILPLAVIMVACTRRLYGTTHNP 225
           P V T +P+A++   C+  +YGTT NP
Sbjct: 176 PFVHTNIPIALLSYGCSNGVYGTTLNP 202


>AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical
           protein Y56A3A.5 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 350 CSYVKSITARDKYLTPCVLTILPLAVIMVACTRRLYGTTHNP 225
           CS VK +  +++   P  LT LP  ++    +  +YGTT NP
Sbjct: 311 CSLVKFL--KNQGAIPFCLTNLPQGLLSYITSNPVYGTTKNP 350


>Z81091-6|CAE17821.2|  306|Caenorhabditis elegans Hypothetical
           protein F55H12.6a protein.
          Length = 306

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 187 LSWFAQSALHNLSGLCVVPYNLLVHATIITARGKIVNTH 303
           ++W   S   +L+  CV PY L +H+    AR  I N H
Sbjct: 66  INWVLSS--EDLARACVCPYCLKIHSRRDNARVHIKNHH 102


>Z75952-8|CAH10792.1|  306|Caenorhabditis elegans Hypothetical
           protein F55H12.6a protein.
          Length = 306

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 187 LSWFAQSALHNLSGLCVVPYNLLVHATIITARGKIVNTH 303
           ++W   S   +L+  CV PY L +H+    AR  I N H
Sbjct: 66  INWVLSS--EDLARACVCPYCLKIHSRRDNARVHIKNHH 102


>AL132860-10|CAB60525.1|  615|Caenorhabditis elegans Hypothetical
           protein Y56A3A.12b protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 320 DKYLTPCVLTILPLAVIMVACTRRLYGTTHNP 225
           D+   P  LT +P  ++    +  +YGTT NP
Sbjct: 167 DQGAVPFCLTNVPQGLLSYVSSNPIYGTTKNP 198


>AL132860-9|CAB60524.1|  647|Caenorhabditis elegans Hypothetical
           protein Y56A3A.12a protein.
          Length = 647

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 320 DKYLTPCVLTILPLAVIMVACTRRLYGTTHNP 225
           D+   P  LT +P  ++    +  +YGTT NP
Sbjct: 199 DQGAVPFCLTNVPQGLLSYVSSNPIYGTTKNP 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,125,781
Number of Sequences: 27780
Number of extensions: 177380
Number of successful extensions: 365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)