Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0633
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   4.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   4.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 125 NLSACMNGLVDRALIYAEIFSCLGL 199
           N++AC     +R L+ A    C G+
Sbjct: 198 NMTACGTDYFNRGLLSASYLVCYGI 222


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 86 RGKALPE*QKNNSINNPALTHSS 18
          RG A+P  Q+ N  N+P +  ++
Sbjct: 21 RGNAVPSSQRGNVHNDPLVVETT 43


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 125 NLSACMNGLVDRALIYAEIFSCLGL 199
           N++AC     +R L+ A    C G+
Sbjct: 74  NMTACGTDYFNRGLLSASYLVCYGI 98


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 86 RGKALPE*QKNNSINNPALTHSS 18
          RG A+P  Q+ N  N+P +  ++
Sbjct: 21 RGNAVPSSQRGNVHNDPLVVETT 43


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 332 ITARDKYLTPCVLTILPLAVIMV 264
           I   DKY    +LT +PL + +V
Sbjct: 85  INKNDKYEENTILTTMPLLINVV 107


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 268 WLHVLGGCM 242
           WL++L GC+
Sbjct: 308 WLYILSGCL 316


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 315  ISNTVRVDYFTSGG 274
            ++ TV  DYF+ GG
Sbjct: 971  VNETVCSDYFSQGG 984


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,002
Number of Sequences: 438
Number of extensions: 2109
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)