Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0630
         (421 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   2.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   2.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   2.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.4  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    20   8.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 64  PCRPTNEALARRGRHG 111
           PCRP  +   RR  HG
Sbjct: 589 PCRPREQLTWRRNFHG 604


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 64  PCRPTNEALARRGRHG 111
           PCRP  +   RR  HG
Sbjct: 481 PCRPREQLTWRRNFHG 496


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 389 PRLINVSLPYFGDTFT 342
           P+ + V +P++G TFT
Sbjct: 259 PKKLIVGIPFYGRTFT 274


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 19   PRPSEPKPTSPARGAPCRPTNEALARRG 102
            P P E KP S      C  TN A  R+G
Sbjct: 1386 PLPEELKPQSGYFKIVCYFTNWAWYRKG 1413


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 100 GRHGTTVAYIVDDSGSDHKFP 162
           G H   V  ++DD GS    P
Sbjct: 401 GYHQNEVGGVIDDGGSGQNQP 421


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 259 IRLVKHFQ*YGLLSKALGV 315
           ++L KH+    LLSK LG+
Sbjct: 4   VKLHKHYVPIILLSKILGI 22


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,479
Number of Sequences: 336
Number of extensions: 1589
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)