Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0630
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1406 + 26343915-26346032 30 0.66
12_01_0877 - 8415186-8415272,8415696-8416310 28 2.7
01_01_0180 + 1533219-1533536,1533658-1533825,1535404-1535475,153... 28 2.7
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884 28 3.5
08_01_0487 + 4272015-4272344 27 4.6
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103... 27 4.6
11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793 27 6.1
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513... 27 6.1
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 27 6.1
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 27 6.1
02_02_0687 + 12969381-12969848,12969961-12970992 27 6.1
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 27 8.1
07_01_1207 + 11511754-11513865 27 8.1
06_02_0244 - 13445023-13445400,13445495-13446823 27 8.1
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 27 8.1
02_04_0061 + 19361562-19363130 27 8.1
01_06_0084 + 26286463-26288259 27 8.1
>07_03_1406 + 26343915-26346032
Length = 705
Score = 30.3 bits (65), Expect = 0.66
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 22 RPSEPKPTSPARGAPCRPTNEALARRGRH 108
RP P SPA + C P A ARRG H
Sbjct: 19 RPRLPPLASPATTSTCAPAPAATARRGSH 47
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 7 EVVLPRPSEPKPTSPARGAPCRP 75
E LP+ EPKP SP R A P
Sbjct: 152 EATLPKKEEPKPPSPPREAEPEP 174
>01_01_0180 +
1533219-1533536,1533658-1533825,1535404-1535475,
1536174-1536179,1536228-1536440,1537434-1537700,
1537947-1538267
Length = 454
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 19 PRPSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSGSDH 153
P P E +P+SP+ C + RRG + VA + D + DH
Sbjct: 6 PPPPEEEPSSPSLRLRCAVQHYEWGRRG-EASLVARLSDANADDH 49
>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
Length = 271
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 70 RPTNEALARRGRHGTTVAYIVDDSGS 147
RP+ A RR RHGT VAY+ + S
Sbjct: 22 RPSPSAPNRRRRHGTVVAYMEPNPNS 47
>08_01_0487 + 4272015-4272344
Length = 109
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1
Query: 31 EPKPTSPARGAPCRPTNEALARRGRHGTTVAYIV 132
E +P GAP RP A R GR G V + V
Sbjct: 61 EMRPRGGGGGAPRRPAPPAGPREGRGGVVVVHAV 94
>04_01_0100 +
1034057-1034308,1034962-1035078,1035152-1035382,
1038200-1038455,1038551-1038807,1038978-1039250,
1039617-1039898,1040045-1040165,1040351-1040520,
1040613-1040711
Length = 685
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 25 PSEPKPTSPARGAPCRPTNEALARR 99
P++P +SPA +P RP+ E L R
Sbjct: 13 PADPPDSSPAASSPPRPSPEELVAR 37
>11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793
Length = 389
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 126 VGDGGSVTTTPRQSLVCWSAGCA 58
VGD G VT + R W+A CA
Sbjct: 39 VGDDGGVTDSARAFEAAWAAACA 61
>06_03_0613 +
22748223-22749513,22750046-22750179,22751066-22751309,
22751401-22751609,22751691-22751740,22751933-22752053,
22752138-22752383
Length = 764
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 307 LGVDFILIVII-CVNVSPKYGSDTLINLGYCSGLWCQR 417
+GV F+L+V++ CV+VS + L++ + LW +R
Sbjct: 11 VGVVFVLVVVVLCVDVSTLVAAQPLVSSQAKTLLWVRR 48
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 7 EVVLPRPSEPKPTSPARGAPCRPTNEALARRGR 105
E V+P PS P P+ P P + L+RR R
Sbjct: 223 ESVMPSPSWPPPSFPPSSTPPSDLDGILSRRRR 255
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 7 EVVLPRPSEPKPTSPARGA 63
E P PS+PKP+SPA A
Sbjct: 61 EPTAPAPSKPKPSSPAPSA 79
>02_02_0687 + 12969381-12969848,12969961-12970992
Length = 499
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 1 RHEVVLP--RPSEPKPTSPARGAPCRPTNEALARRG 102
R V LP + S+P+P A+GAP A+ RRG
Sbjct: 27 RSSVTLPAEKTSKPRPPPEAKGAPLVGIIPAVLRRG 62
>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
Length = 260
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 22 RPSEPKPTSPARGAPC 69
RPS P PT+PA G C
Sbjct: 147 RPSSPAPTNPADGPRC 162
>07_01_1207 + 11511754-11513865
Length = 703
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 10 VVLPRPSEPKPTSPARGAPCRPTNE 84
V+LPRP P P P GAP P ++
Sbjct: 8 VLLPRPPPPPP--PPAGAPTEPDDD 30
>06_02_0244 - 13445023-13445400,13445495-13446823
Length = 568
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +1
Query: 10 VVLPRPSEPKPTSPARGAPCRPTNEALAR-----RGRHGTTVAYIVDDSGSDHK 156
V PR EP + RG P E + R G AYI+D DH+
Sbjct: 292 VFKPRDEEPMAKNNPRGLPVSTDGEGMKRGTLVGEGAFREVAAYILDHPIGDHE 345
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 317 STPKALDSNPYYWKCFTSLI 258
S+P +++ Y+WK FTS++
Sbjct: 365 SSPNMKETDEYFWKAFTSVL 384
>02_04_0061 + 19361562-19363130
Length = 522
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 120 DGGSVTTTPRQSLVCWSAGCAA 55
DG V T P + V WSAG AA
Sbjct: 109 DGDLVLTDPAANKVLWSAGAAA 130
>01_06_0084 + 26286463-26288259
Length = 598
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 76 LVGRVRRVQERLALAQKV*VEPP 8
L+GRV R+ E L L + + +EPP
Sbjct: 372 LLGRVGRISEALGLIESMPMEPP 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,208,941
Number of Sequences: 37544
Number of extensions: 183320
Number of successful extensions: 780
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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