Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0630
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               29   1.2  
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_37916| Best HMM Match : HCV_NS4a (HMM E-Value=0.38)                 28   2.7  
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 28   2.7  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         27   4.8  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   4.8  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 292 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCS 399
           LL+ +LG D + ++I C++ S    SDTL  L Y +
Sbjct: 127 LLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYAN 162


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 19  PRPSEPKPTSPARG-APCRPTNEAL 90
           P PS P PT P R   P  P++EAL
Sbjct: 298 PTPSPPTPTPPPRSPTPLHPSSEAL 322


>SB_37916| Best HMM Match : HCV_NS4a (HMM E-Value=0.38)
          Length = 276

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 289 GLLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCSGLW 408
           G+    +GV  I++ I C+ V  K  S  +   G   G+W
Sbjct: 21  GIFQSVIGVLMIVVAIPCIIVHDKDFSSIMFGFGISVGVW 60


>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCR 72
           PRPS PKPT P     CR
Sbjct: 299 PRPSRPKPTLPPFAEKCR 316



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCR 72
           PRPS PKPT P     C+
Sbjct: 79  PRPSRPKPTLPPFAQKCK 96



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCR 72
           PRPS PKPT P     C+
Sbjct: 134 PRPSRPKPTLPPFAQKCK 151



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCR 72
           PRPS PKPT P     C+
Sbjct: 189 PRPSRPKPTLPPFAQKCK 206



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCR 72
           PRPS PKPT P     C+
Sbjct: 244 PRPSRPKPTLPPFAQKCK 261


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 19  PRPSEPKPTSPARG 60
           PRP+ PKPT+P +G
Sbjct: 338 PRPTPPKPTAPPKG 351


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 19   PRPSEPKPTSPARG 60
            PRP+ PKPT+P +G
Sbjct: 3239 PRPTPPKPTAPPKG 3252


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +1

Query: 19   PRPSEPKPTSPARGAP-CRPTNEALARRGRHGTTVAYIVDDSGSDHKFP 162
            PRP   +P +        R T  ALA RG H   V     D G   KFP
Sbjct: 1576 PRPESLQPWATRHSVDVARSTGPALASRGTHSAPVFPTNSDQGR-FKFP 1623


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCRPTNE 84
           P+ S PK T P +  PC P NE
Sbjct: 667 PQWSRPKVTRPCQLPPCPPPNE 688


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,537,433
Number of Sequences: 59808
Number of extensions: 197943
Number of successful extensions: 907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)