Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0630
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    27   7.2  
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCRP 75
           P PS P+P SP  G P  P
Sbjct: 281 PSPSPPRPLSPVFGQPAPP 299


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 25  PSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSGSDHKF 159
           PS+P P +PA  A          RR  +  T+  ++DDS S   F
Sbjct: 356 PSKPAPAAPASAATSPAPAPEAPRRDPNNVTI--VLDDSLSPEDF 398


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 25  PSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSGSDHKF 159
           PS+P P +PA  A          RR  +  T+  ++DDS S   F
Sbjct: 356 PSKPAPAAPASAATSPAPAPEAPRRDPNNVTI--VLDDSLSPEDF 398


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 25  PSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSGSDHKF 159
           PS+P P +PA  A          RR  +  T+  ++DDS S   F
Sbjct: 356 PSKPAPAAPASAATSPAPAPEAPRRDPNNVTI--VLDDSLSPEDF 398


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSG 144
           P P  P PT    G P  PT      +G H T +  I+D  G
Sbjct: 258 PGPPGP-PTRRPPGPPGPPTRRPPGHQGHHITMIMDIMDTMG 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,437,300
Number of Sequences: 27780
Number of extensions: 146253
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)