Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0630
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   9.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.9  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 47  LLHAAHPADQQTRLWRG 97
           LLH   P D   RLW G
Sbjct: 463 LLHLIFPPDIAKRLWLG 479


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 65  GAPRAGEVGFGSEGL 21
           G P   E+GF +EGL
Sbjct: 209 GVPTLEELGFDTEGL 223


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 11  WFYLDLLSQSQPL 49
           WF+LDL+S S PL
Sbjct: 168 WFFLDLIS-SIPL 179


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 11  WFYLDLLSQSQPL 49
           WF+LDL+S S PL
Sbjct: 168 WFFLDLIS-SIPL 179


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 11  WFYLDLLSQSQPL 49
           WF+LDL+S S PL
Sbjct: 168 WFFLDLIS-SIPL 179


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 318 FYSNRHYMCKCISKIRQRYI 377
           + SN   +CKC ++  +RY+
Sbjct: 663 YSSNNKTLCKCDAQNCRRYL 682


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 289 GLLSKALGVDFILIVIICVNVSPKYGSDTLINLGY 393
           GLL K     ++ ++ + +N SP Y   T   +G+
Sbjct: 644 GLLDKFFFPKWLQVLALWLNHSPNYDQVTNWYMGW 678


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 304  ALGVDFILIVIICVNVSPKYGSD 372
            A+ V  + +++ICV     +GSD
Sbjct: 1594 AILVIIVAVIVICVLRGKGHGSD 1616


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,842
Number of Sequences: 438
Number of extensions: 1916
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)