Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0630
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59680.1 68418.m07482 leucine-rich repeat protein kinase, put...    27   6.8  
At3g28790.1 68416.m03593 expressed protein                             27   6.8  
At1g32090.1 68414.m03949 early-responsive to dehydration protein...    27   6.8  
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro...    26   9.0  
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic...    26   9.0  
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic...    26   9.0  

>At5g59680.1 68418.m07482 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 882

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 7   EVVLPRPSEPKPTSPARGAPCRPTNEALARR 99
           EVVLPRPS P    P   +P  P+ E   R+
Sbjct: 540 EVVLPRPSRPTMNVPYANSP-EPSIEMKKRK 569


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSGS 147
           P PS P P++P    P  P+  A  +    G+  A +  +S S
Sbjct: 296 PTPSTPTPSTPTPSTPA-PSTPAAGKTSEKGSESASMKKESNS 337


>At1g32090.1 68414.m03949 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 806

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 410 HQRPEQ*PRLINVSLPYFGDTF-THIM 333
           HQ P Q PR I VS+P     F T+IM
Sbjct: 494 HQSPSQIPRTIGVSIPMKATFFITYIM 520


>At4g15200.1 68417.m02329 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 600

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 19  PRPSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVD 135
           P+P  P P   AR  P  P   A  R+G   +  A  VD
Sbjct: 283 PKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVD 321


>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17)
          identical to gi_11935086_gb_AAG41963
          Length = 162

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 25 PSEPKPTSPARGAPCRPTNEA 87
          P +PKPTSPA  +P  PT E+
Sbjct: 36 PHKPKPTSPAI-SPAAPTPES 55


>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17)
          identical to gi_11935086_gb_AAG41963
          Length = 185

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 25 PSEPKPTSPARGAPCRPTNEA 87
          P +PKPTSPA  +P  PT E+
Sbjct: 36 PHKPKPTSPAI-SPAAPTPES 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,014,188
Number of Sequences: 28952
Number of extensions: 138175
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)