Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0629
         (440 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XVI1 Cluster: Putative uncharacterized protein; n=1; ...    34   1.2  
UniRef50_UPI0000DC1FED Cluster: UPI0000DC1FED related cluster; n...    33   3.6  
UniRef50_Q4Z280 Cluster: Putative uncharacterized protein; n=1; ...    32   4.7  
UniRef50_UPI00006D0E1D Cluster: Ubiquitin carboxyl-terminal hydr...    32   6.3  
UniRef50_UPI0000DC1068 Cluster: UPI0000DC1068 related cluster; n...    32   6.3  
UniRef50_Q2PRK4 Cluster: Odorant receptor; n=3; Danio rerio|Rep:...    32   6.3  
UniRef50_Q8RCL8 Cluster: Putative uncharacterized protein TTE040...    32   6.3  
UniRef50_Q93A44 Cluster: Amino-acid racemase; n=1; Enterococcus ...    31   8.3  

>UniRef50_Q4XVI1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 180

 Score = 34.3 bits (75), Expect = 1.2
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
 Frame = +3

Query: 81  CVVCAYDLTNACVCLMFCRCVHV*TQYQFFKMYLYFFFCILYYNLCWNNKQTNKKKLLYS 260
           C+VC+Y     C+  + C C +    Y       Y  F  L++ +    K    K+++Y 
Sbjct: 44  CIVCSYYFIPFCLFFIACSCKYQIISYSIIINLFYSIF--LFFIMISLIKMRVCKEIVYF 101

Query: 261 IRVVVESFLLYF-----RISKD*HTNSSRLLVSTVHRHTFSFDP*FE 386
           +R+    F +Y       I +D   N+  +LV T     F  D  +E
Sbjct: 102 LRLFCSIFYIYILHIVVNILRDIQKNAFYVLVCTYINRCFIKDLYYE 148


>UniRef50_UPI0000DC1FED Cluster: UPI0000DC1FED related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC1FED UniRef100 entry -
           Rattus norvegicus
          Length = 239

 Score = 32.7 bits (71), Expect = 3.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 90  CAYDLTNACVCLMFCRCVHV*TQYQFFKMYLYFFFCILYYNLC 218
           CA+  T  C+ +  C CV++   Y +  +Y+Y + C+   N+C
Sbjct: 131 CAHTHTYICIYMHICICVYM--YYIYIYIYIYIYMCVC-VNVC 170


>UniRef50_Q4Z280 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 116

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126 MFCRCVHV*TQYQFFKMYLYFFFCILYYNLCWNNKQTNKKKL-LYSIRVVVESFLLYFR 299
           M+C C+H+ ++Y +++  ++FFF I      WN+  T+   + L+ +      F L+FR
Sbjct: 1   MYCLCLHL-SRYLYYEKKIFFFFLI----AIWNSNTTHVMLVWLFVMHYFFVIFSLFFR 54


>UniRef50_UPI00006D0E1D Cluster: Ubiquitin carboxyl-terminal hydrolase
            family protein; n=1; Tetrahymena thermophila SB210|Rep:
            Ubiquitin carboxyl-terminal hydrolase family protein -
            Tetrahymena thermophila SB210
          Length = 4350

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 201  LYYNLCWNNKQTNKKKLLYSIR--VVVESFLLY 293
            L+ ++CW N+Q N KKL+ S+R  VV   FL Y
Sbjct: 4130 LFIHICWGNEQ-NTKKLIISLREYVVDHQFLYY 4161


>UniRef50_UPI0000DC1068 Cluster: UPI0000DC1068 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC1068 UniRef100 entry -
           Rattus norvegicus
          Length = 376

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 78  GCV-VCAYDLTNACVCLMFCRCVHV 149
           GCV VC +    ACVC   C C+HV
Sbjct: 269 GCVHVCVHVCMCACVCACMCACMHV 293


>UniRef50_Q2PRK4 Cluster: Odorant receptor; n=3; Danio rerio|Rep:
           Odorant receptor - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 318

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +1

Query: 244 KNYFIPFVL-LWNRFSYTFESLKTDTLTLRVFLFQ----XCIVIRFHSI 375
           +N  IP+ L L+N FS  F S+ T +LTL V  F      C+ +R+H I
Sbjct: 91  RNQLIPYRLCLYNMFS-VFVSISTQSLTLAVLSFDRLVAICLPLRYHMI 138


>UniRef50_Q8RCL8 Cluster: Putative uncharacterized protein TTE0407;
           n=1; Thermoanaerobacter tengcongensis|Rep: Putative
           uncharacterized protein TTE0407 - Thermoanaerobacter
           tengcongensis
          Length = 112

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = +3

Query: 165 FFKMYLYF--------FFCILYYNLCWNNKQTNKKKLLYSIRVVVESFLLYFRI 302
           FFK Y+YF        FF   Y N+  + +  NK    +SI  VV SF L F +
Sbjct: 19  FFKSYMYFAFFAFFSNFFTSRYINILQDKQLQNKMAEAHSISFVVTSFFLSFML 72


>UniRef50_Q93A44 Cluster: Amino-acid racemase; n=1; Enterococcus
           faecalis|Rep: Amino-acid racemase - Enterococcus
           faecalis (Streptococcus faecalis)
          Length = 702

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 165 FFKMYLYFFFCILYYNLCWNNKQTNKKKLLYSIRVV-VESFLLYFRIS 305
           FF +  YF    L  N  +NN Q   KK LY I ++ + S LLYF +S
Sbjct: 50  FFMITGYFLLGRLSLNFSYNNNQ-RVKKYLYKIGMIYLYSILLYFPLS 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,709,779
Number of Sequences: 1657284
Number of extensions: 5753509
Number of successful extensions: 15371
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15071
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)