Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0629
         (440 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.015
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   3.0  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    20   9.1  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    20   9.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 0.015
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 123 LMFCRCVHV*TQYQFFKMYLYFFFCILYYNLC 218
           L+FC    + T +  F + +Y+F+C L   LC
Sbjct: 266 LLFCCAFIIFTMHLLFLLCIYYFYCALIILLC 297



 Score = 25.0 bits (52), Expect = 0.32
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 VCLMFCRCVHV*TQYQFFKMYLYFFFC 197
           V L+F  C++      FF + +Y+F+C
Sbjct: 125 VHLLFLLCIYYFVVPLFFLLCIYYFYC 151


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 173  FKELVLRLYVYAPTKHKTNTCIS*IVSAHN 84
            F+ +V+  YVY  T     T  S  V+ HN
Sbjct: 1208 FQRMVVARYVYYATIFTIITATSSFVTIHN 1237


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 48  RCAI*ILTRSGCVVCAYDLTNACVCLMF 131
           +C   +LT  G + C++       C++F
Sbjct: 16  KCITKVLTILGLLSCSFPKKKLVYCIIF 43


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 48  RCAI*ILTRSGCVVCAYDLTNACVCLMF 131
           +C   +LT  G + C++       C++F
Sbjct: 12  KCITKVLTILGLLSCSFPKKKLVYCIIF 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,452
Number of Sequences: 336
Number of extensions: 1737
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)