Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0629
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   5.2  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    24   9.0  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    24   9.0  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 349 CIVIRFHSIHNSKIDY*KKKV 411
           C V+RF + HN+ I+   KKV
Sbjct: 24  CRVVRFTTFHNTPIEVYNKKV 44


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 336 EDAKS*CVSL*RFESIRETIPQQHEWNKV 250
           E AK  CV   R +   E I  QH+WN V
Sbjct: 21  EFAKYTCVYKKRHDEKIEYITAQHDWNPV 49


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 156 QYQFFKMYLYFFFCILYYNLCWNNKQTNKK 245
           ++ F  +++    CI YY +C    + N K
Sbjct: 173 RFGFLSLFIIMAVCIQYYRICDRRVKVNFK 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,371
Number of Sequences: 5004
Number of extensions: 26967
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)