Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0629
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518...    33   0.13 
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467...    31   0.31 
07_03_0396 + 17672009-17672339,17672408-17673087                       27   6.7  

>05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,
            5184024-5184143,5184247-5184375,5184466-5184591,
            5185550-5185667,5186471-5186680,5186788-5187100,
            5187467-5187560,5187760-5187868,5188322-5188593,
            5188684-5188811,5188977-5189211,5189794-5189982,
            5190069-5190349,5190431-5190698,5190719-5190961,
            5191598-5191680,5192484-5192493
          Length = 1366

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 159  YQFFKMYLYFFFCILYYNLCWNNKQTNKKKLLYSIRVVVES 281
            YQ+++  +Y   CIL Y L W+ +Q  +++ L  +R  V S
Sbjct: 949  YQWWEGSIYSILCILSYPLAWSWQQWRRRRKLQRLREFVRS 989


>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
            4675953-4676072,4676185-4676313,4676394-4676442,
            4676899-4676970,4677574-4677707,4677798-4677915,
            4678332-4678541,4678630-4678942,4679539-4679632,
            4679854-4679962,4680243-4680514,4680597-4680724,
            4680832-4681066,4681570-4681758,4681845-4682128,
            4682218-4682398,4682486-4682728,4682904-4682986,
            4683119-4683227,4687996-4688091,4688675-4688764,
            4688881-4689129,4689233-4689412,4690179-4690250,
            4691385-4691474,4691605-4691705,4691794-4691959
          Length = 1757

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 159  YQFFKMYLYFFFCILYYNLCWNNKQTNKKKLLYSIRVVVES 281
            YQ+++  ++   C+L Y L W+ +Q  ++K L  +R  V S
Sbjct: 987  YQWWEGSIHSILCVLAYPLAWSWQQFRRRKKLQRLREFVRS 1027


>07_03_0396 + 17672009-17672339,17672408-17673087
          Length = 336

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 81  CVVCAYDLTNACVCLMFCRCVHV*TQYQ 164
           C  C      A +CL  CRC HV   YQ
Sbjct: 91  CTRCGIVGHTASLCLPTCRCDHVPKDYQ 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,953,802
Number of Sequences: 37544
Number of extensions: 139582
Number of successful extensions: 250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)