Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0629
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            27   5.2  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              27   6.9  
SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 23  HCVATM*TTLRNINTNPLWLCCVRLRFN*CMCLSYVLSVRTRIDAV 160
           HC  T   T+R + T+P  LC +  RF+   C    ++ R  + +V
Sbjct: 358 HCTVTTRQTVRTVQTSPDRLCAL-YRFHQTDCAHCTVTTRQTVRSV 402


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 114 CVCLMFCRCVHV*TQYQFFKMYLYFFFCILYYNLCW 221
           C C  +C C      Y ++  Y Y ++C  YY  C+
Sbjct: 474 CYCYYYCYCYCY--YYCYYYCYCYCYYC-CYYCYCY 506


>SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +3

Query: 153 TQYQFFKMYLYFFFCILYYNLCWNNKQTNKKKLLYSIRVVVESFLLYFRISKD*HTNSSR 332
           T Y ++  Y Y+++   YY      +   +  L+Y+IR     F  Y R     H   SR
Sbjct: 8   TAYYYY-YYYYYYYYYYYYYAILEFRGEVRSLLVYTIRTSCNKF-FYDRAESIKHAERSR 65

Query: 333 LLVSTVH 353
                VH
Sbjct: 66  RKRGYVH 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,429,259
Number of Sequences: 59808
Number of extensions: 197790
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)