Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0629
         (440 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001439-1|AAN71194.1| 1040|Drosophila melanogaster GH25102p pro...    29   3.7  
AE013599-3262|AAF46757.2| 1040|Drosophila melanogaster CG17922-P...    29   3.7  
AF215703-1|AAF43004.1| 5322|Drosophila melanogaster KISMET-L lon...    28   6.5  
AE014297-2123|AAN13689.1|  133|Drosophila melanogaster CG31088-P...    28   6.5  
AE014134-62|AAF51527.3| 5322|Drosophila melanogaster CG3696-PA, ...    28   6.5  
DQ027826-1|AAY44826.1| 1031|Drosophila melanogaster suppressor-o...    27   8.6  
AF545061-1|AAN64918.1| 1031|Drosophila melanogaster dihydropyrim...    27   8.6  
AE014298-1301|AAN09247.1| 1031|Drosophila melanogaster CG2194-PC...    27   8.6  
AE014298-1300|AAF46461.2| 1031|Drosophila melanogaster CG2194-PB...    27   8.6  

>BT001439-1|AAN71194.1| 1040|Drosophila melanogaster GH25102p
           protein.
          Length = 1040

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 157 CVYTCTHRQNIRQTHALVKS*AHTTQP 77
           CV +  H+ N+  THALVK   H  +P
Sbjct: 200 CVDSTEHQNNVGATHALVKHILHHEKP 226


>AE013599-3262|AAF46757.2| 1040|Drosophila melanogaster CG17922-PA
           protein.
          Length = 1040

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 157 CVYTCTHRQNIRQTHALVKS*AHTTQP 77
           CV +  H+ N+  THALVK   H  +P
Sbjct: 200 CVDSTEHQNNVGATHALVKHILHHEKP 226


>AF215703-1|AAF43004.1| 5322|Drosophila melanogaster KISMET-L long
            isoform protein.
          Length = 5322

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 292  TFESLKTDTLTLRVFLFQXCIVIRFHSIHN 381
            TFE + TD + L+ F ++ C++   H + N
Sbjct: 2144 TFEMIVTDYMDLKAFNWRLCVIDEAHRLKN 2173


>AE014297-2123|AAN13689.1|  133|Drosophila melanogaster CG31088-PA
           protein.
          Length = 133

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 105 LNRKRTQHNQSGLVFILRNVVYIVATQ*TLFNLVP 1
           L+++  QHNQ+GL+FI  ++V     Q +L N +P
Sbjct: 32  LHQQEEQHNQTGLLFI-ESIVKFKFQQLSLCNAMP 65


>AE014134-62|AAF51527.3| 5322|Drosophila melanogaster CG3696-PA,
            isoform A protein.
          Length = 5322

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 292  TFESLKTDTLTLRVFLFQXCIVIRFHSIHN 381
            TFE + TD + L+ F ++ C++   H + N
Sbjct: 2144 TFEMIVTDYMDLKAFNWRLCVIDEAHRLKN 2173


>DQ027826-1|AAY44826.1| 1031|Drosophila melanogaster
           suppressor-of-rudimentary dihydropyrimidine
           dehydrogenase mutant protein.
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 91  HTTQPERVSIYIAQRCLHCRDA 26
           HTT  ER ++  A RCL C DA
Sbjct: 66  HTTLSERGALEEAARCLKCADA 87


>AF545061-1|AAN64918.1| 1031|Drosophila melanogaster
           dihydropyrimidine dehydrogenase protein.
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 91  HTTQPERVSIYIAQRCLHCRDA 26
           HTT  ER ++  A RCL C DA
Sbjct: 66  HTTLSERGALEEAARCLKCADA 87


>AE014298-1301|AAN09247.1| 1031|Drosophila melanogaster CG2194-PC,
           isoform C protein.
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 91  HTTQPERVSIYIAQRCLHCRDA 26
           HTT  ER ++  A RCL C DA
Sbjct: 66  HTTLSERGALEEAARCLKCADA 87


>AE014298-1300|AAF46461.2| 1031|Drosophila melanogaster CG2194-PB,
           isoform B protein.
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 91  HTTQPERVSIYIAQRCLHCRDA 26
           HTT  ER ++  A RCL C DA
Sbjct: 66  HTTLSERGALEEAARCLKCADA 87


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,045,479
Number of Sequences: 53049
Number of extensions: 268145
Number of successful extensions: 559
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)