Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0629
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88309-6|AAB42332.1|  389|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    27   4.6  
AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin ...    27   6.0  

>U88309-6|AAB42332.1|  389|Caenorhabditis elegans Hypothetical
           protein T23B3.1 protein.
          Length = 389

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 YQFFKMYLYFFFCILYYN 212
           Y F   Y++FFFCI Y N
Sbjct: 234 YDFRPTYIFFFFCIFYVN 251


>Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical
           protein Y41E3.16 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 201 LYYNLCWNNKQTN--KKKLLYSIRVVVESFLLYFRISK 308
           +YY++ +    T+  K K+++S R+V+ S  +YF  S+
Sbjct: 607 VYYSILFRKHTTSFLKNKIIFSTRIVISSPTIYFFFSE 644


>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 91  HTTQPERVSIYIAQRCLHCRDA 26
           HTT  ER ++  A RCL C DA
Sbjct: 79  HTTLSERGALKEAMRCLKCADA 100


>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +1

Query: 85  LCALTI*LMHVFVLCFVGAYTYRRS-TNS 168
           LC+L+I +M+VF LCF  AY +  S TN+
Sbjct: 152 LCSLSIHMMYVFFLCF--AYVWSGSDTNA 178


>AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin
           protein 1 protein.
          Length = 227

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 180 LYFFFCILYYNLCWNNKQTNKKKLLYSIRVVVESFLLYF 296
           +Y  F    Y + WN  QT K+  L  +      F+L+F
Sbjct: 104 IYVIFICFVYVIFWNIYQTEKRIPLVDLGATALLFILFF 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,776,430
Number of Sequences: 27780
Number of extensions: 159029
Number of successful extensions: 370
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)