Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0629
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02630.1 68418.m00199 expressed protein                             29   1.4  
At4g32920.1 68417.m04685 glycine-rich protein                          29   1.4  
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,...    27   4.2  
At1g55130.1 68414.m06296 endomembrane protein 70, putative simil...    27   5.6  
At1g49030.1 68414.m05497 expressed protein similar to PGPS/D12 [...    27   5.6  
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate...    27   7.4  

>At5g02630.1 68418.m00199 expressed protein
          Length = 428

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = +3

Query: 174 MYLYFFFCIL-----YYNLCWNNKQTNKK-KLLYSIRVVVESFLL 290
           +YL FF C L     +   CWN+KQ  K+  LL +  ++V+S  L
Sbjct: 173 LYLVFFLCYLSFLCFWLCFCWNHKQIVKRIHLLMTALLLVKSLTL 217


>At4g32920.1 68417.m04685 glycine-rich protein 
          Length = 1432

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 141  VHV*TQYQFFKMYLYFFFCILYYNLCWNNKQTNKKKLLYSIRVVVES 281
            V+V   YQ+++  +Y    +L Y L W+ +Q+ ++     +R  V S
Sbjct: 986  VNVIAAYQWWEGAIYIMLSVLVYPLAWSWQQSRRRLKFQKLRDFVRS 1032


>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
            Arabidopsis thaliana
          Length = 1411

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 159  YQFFKMYLYFFFCILYYNLCWNNKQTNKKKLLYSIRVVVES 281
            YQ+++  +Y    ++ Y L W+ +Q  +K  L  +R  V S
Sbjct: 995  YQWWEGAIYSILSVVAYPLAWSWQQWRRKMKLQKLREFVRS 1035


>At1g55130.1 68414.m06296 endomembrane protein 70, putative similar
           to multispanning membrane protein GI:2276460 from [Homo
           sapiens]
          Length = 637

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +3

Query: 183 YFFFCILYYNLCWNNKQTNKKKLLYSIRVVVESFLLYFRISK 308
           YF  C   YN CW    T+    LY     V  F     ISK
Sbjct: 552 YFQLCSEDYNWCWRAYLTSGSSSLYLFLYSVFYFFTKLEISK 593


>At1g49030.1 68414.m05497 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 224

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 157 CVYTCTHRQNIRQTHALVKS*AHTTQPERVSIYIAQRCLHCRD 29
           CVYTCT R  +R  + L  + A    P+ ++    + C  C++
Sbjct: 145 CVYTCTFRTKLRSKYGLPDAPA----PDWITHCFCEYCALCQE 183


>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
           very low similarity to SP|Q9UUA2 DNA repair and
           recombination protein pif1, mitochondrial precursor
           {Schizosaccharomyces pombe}; contains weak hit to
           PF02178: AT hook motif
          Length = 1678

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 229 NKQTKKNYFIPFVLLWNRFSYTFESLKTDTLTLRVFLFQXCIVIRFHSIHNSKIDY*K 402
           +K  KKN     +  W  F      ++  TL     LFQ C+   + +I +++++Y K
Sbjct: 608 SKSKKKNKKCISMRQWFAFRIQEREVECQTLLRSKRLFQQCLCDAYTTIESNRLNYIK 665


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,752,635
Number of Sequences: 28952
Number of extensions: 127317
Number of successful extensions: 294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)