Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0626
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)           28   6.2  

>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
          Length = 657

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 174 CKKMFQT*F*PVSSRPINLKIWKRIINYYSVSIFPLGLSEKKNRFXAQ 317
           C+K+    F    S P   K+ K + NYY V   P+ LS  + +   Q
Sbjct: 499 CEKILLELFCHSDSIPFQQKVSKSVPNYYKVITHPMDLSTIRAKIQPQ 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,913,380
Number of Sequences: 59808
Number of extensions: 194965
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)