Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0626
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.7  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 219 PINLKIWKRIINYY 260
           P   +I+KRII+YY
Sbjct: 416 PAFYRIYKRIIDYY 429


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 219 PINLKIWKRIINYY 260
           P   +I+KRII+YY
Sbjct: 416 PAFYRIYKRIIDYY 429


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 73  LYVNFTFLTRFL--SLSCIT*TFIKQVKHSDTYNSHVKRCFKRN 198
           +Y N   L R    S S +T + + +  H D  N+H++R    N
Sbjct: 124 IYANHCELHRAACHSGSSLTKSRLMRCLHHDIENAHIRRTLHMN 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,415
Number of Sequences: 438
Number of extensions: 2094
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)