Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0620
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.53 
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   3.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   8.7  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   8.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 162 LKTGDFKTENEPLKKYALCMLIKSQLMTKDGNSRRTSLW 278
           LK  +F    E     ALC   + Q  +  GN  R  LW
Sbjct: 18  LKNAEFNGLPEEKLLDALCQSFRKQNSSSCGNGNRCDLW 56


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 20/94 (21%), Positives = 38/94 (40%)
 Frame = +2

Query: 122 SLRDES**TIGEQTEDRRL*D*KRTIEEVCSMYADQITADDQGREFKKDVALAKVPNAED 301
           S RD+   T  +  +  R+   KR +    +   ++     +GRE KK +  A V N   
Sbjct: 28  STRDDKYTTRYDNVDVDRILHSKRLLLNYINCLLEKGPCSPEGRELKKILPDALVTNCSK 87

Query: 302 KLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKD 403
             +V+K     +       ++  WN +   ++ D
Sbjct: 88  CSEVQKKQAGKILTFVLLNYRNEWNQLVAKYDPD 121


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 355 PSPNSLELCEMLPRERPEA 411
           P  N  E   + PRERP A
Sbjct: 302 PGQNPGEKTNIAPRERPRA 320


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 356 PHQTAWNYVKCYHEKDPKHALFL*THNPTQPFHT 457
           PH+    Y +C H K  + A       P   FHT
Sbjct: 484 PHELCDKYYRCVHGKPTEFAC-----RPGTVFHT 512


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 357 GLLPLLARQASISFSTFNLSSALGTLARATSFLNSR 250
           GL+P     AS+S S  N  S+   +    S  NSR
Sbjct: 315 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNENSR 350


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 357 GLLPLLARQASISFSTFNLSSALGTLARATSFLNSR 250
           GL+P     AS+S S  N  S+   +    S  NSR
Sbjct: 104 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNENSR 139


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 357 GLLPLLARQASISFSTFNLSSALGTLARATSFLNSR 250
           GL+P     AS+S S  N  S+   +    S  NSR
Sbjct: 104 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNENSR 139


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 537 HHTRLQYSPINH 502
           HH +  YSP NH
Sbjct: 72  HHGQWNYSPDNH 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,790
Number of Sequences: 336
Number of extensions: 3236
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)