Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0620
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 29 0.76
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 28 1.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 1.0
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 28 1.3
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 4.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 26 5.3
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 5.3
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 5.3
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 28.7 bits (61), Expect = 0.76
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -3
Query: 286 HFSQSDVLLEFPSLVISCDLISIHRAYFFNGSFSVL 179
HFS++ +L +FP+L++ C + R + + S S++
Sbjct: 217 HFSEAHILEKFPNLLLHCFRGYVERMFIDSMSMSII 252
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 194 TIEEVCSMYADQITADDQGREFKKDVALAKVPNAEDKLKVEK 319
T +E+C DQI + + EF+K+ L ++ NA++KL+ E+
Sbjct: 314 TNQELC----DQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQ 351
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.3 bits (60), Expect = 1.0
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = -1
Query: 321 SFSTFNLSSALGTLARATSFLNSRPWSSAV--I*SAYIEHTSSMVRFQS*SRLSSVCSPI 148
S ST N+ S+ A +T L+S SS+ + ++YI + SS V S LSS + +
Sbjct: 512 SSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSS--NSL 569
Query: 147 VHQLSSRRDSRLCVSSSS 94
SS S + +SSS
Sbjct: 570 SSSTSSASTSYIPSASSS 587
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +3
Query: 21 CIMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFK 182
C + F+V V V A LTDE+K L K R + S + E+L K FK
Sbjct: 233 CAIVIFLVLPVSVETANFLTDEEK-TLAKMRIENDSSSAISEKLSFKQSLTVFK 285
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 24 IMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGD-FKTENEPL 200
I+ TF++FVV ++L + L ++ K+ + + + E KL GD F+ P+
Sbjct: 274 IIDTFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.0
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -1
Query: 339 ARQASISFSTFNLSSALGTLARATSFLNSRPWSSAVI*SAYIEH--TSSMVRFQS*SRLS 166
A S S S+ LSS+ T ++SF+ S SS+ S+ +SS S S S
Sbjct: 54 ATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS 113
Query: 165 SVCSPIVHQLSSRRDSRLCVSSSS 94
S H LSS S + SSSS
Sbjct: 114 PTSSSSSHALSSSSSSLVASSSSS 137
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.0
Identities = 31/82 (37%), Positives = 43/82 (52%)
Frame = -1
Query: 330 ASISFSTFNLSSALGTLARATSFLNSRPWSSAVI*SAYIEHTSSMVRFQS*SRLSSVCSP 151
+S S STF SSA T + ++S+L+ SS+V+ S+ +SS S S LS+ P
Sbjct: 190 SSTSSSTF--SSAAPT-STSSSYLS----SSSVVSSSSSPSSSSSSTLTS-SSLSTSSIP 241
Query: 150 IVHQLSSRRDSRLCVSSSSPSA 85
SS S L SSSS +A
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTA 263
Score = 25.0 bits (52), Expect = 9.3
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = -1
Query: 330 ASISFSTFNLSSALGTLARATSFLNSRPWS-SAVI*SAYIEHTSSMVRFQS*SRLSSVCS 154
+S S ST + SS+ ++ ++S +S P S S+ I S+ +S + S SS S
Sbjct: 256 SSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS 315
Query: 153 PIVHQLSSRRDSRLCVSSSSPSA 85
LSS S SSSP++
Sbjct: 316 SFSSTLSSSSMSSSSSFSSSPTS 338
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -3
Query: 313 YFQFVFSIRHFSQSDVLLEFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSL 158
Y + FS HF S + S + C L +++ + + SF+V+ +F L
Sbjct: 700 YVVYYFSSLHFGASQISSAIGSFAVGC-LGNMYSHFIKSSSFAVVLPAIFVL 750
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.0
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -1
Query: 327 SISFSTFNLSSALGTLARATSFLNSRPWSSAVI*SAYIEHTSSMVRFQS*-SRLSSVCSP 151
S S ST + S + S +S P SS+ S+ I SS + S S SSV S
Sbjct: 520 STSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSI 579
Query: 150 IVHQLSSRRDSRLCVSSSSPSA 85
+ SS + L +SSSS S+
Sbjct: 580 LSSSTSSPSSTSLSISSSSTSS 601
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 86 LICEGLSQDNADDEHDKSLHDALCLGSC 3
++C G + + E ++SLHDALC+ C
Sbjct: 376 ILCRGANLLTLE-EAERSLHDALCVIRC 402
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 218 YADQITADDQGREFKKDVALAKVPNAEDKLKVEKLIDAC 334
Y D+ R + DV+LA++ + D K+ ++D C
Sbjct: 374 YLDENAGKLSNRMKRGDVSLAQISSGGDLKKINHVLDTC 412
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 60 VLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 212
V + +TD N+ + L E + + ++K KT DFK + + YA
Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,991
Number of Sequences: 5004
Number of extensions: 54167
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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