Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0620
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   3.2  
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    29   3.2  
08_01_0175 - 1497700-1498459,1498546-1499939                           28   5.5  
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330...    28   5.5  
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76...    28   5.5  
02_03_0326 + 17751485-17751955                                         28   7.3  
02_03_0029 - 14077737-14077794,14077920-14078051,14078264-140783...    28   7.3  

>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +2

Query: 29  EDFYR--VRRLRCLGSGPHR*AEGELEETQSR-LSLRDE 136
           EDF+R  ++RL+ LG  P     GE+EE ++R +S+RD+
Sbjct: 103 EDFFRKSIQRLKTLG--PRHNIAGEIEELKARVISVRDQ 139


>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +3

Query: 51  VCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 230
           VC+V+      +  E +KK  ++  SE +    LV  L   D+   N  L +   C  I 
Sbjct: 46  VCIVIGYCEGGDMSEAIKKANSNYFSEERLCMWLVQLLMALDYLHVNHILHRDVKCSNI- 104

Query: 231 SQLMTKDGNSR 263
              +TKD N R
Sbjct: 105 --FLTKDQNIR 113


>08_01_0175 - 1497700-1498459,1498546-1499939
          Length = 717

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 357 GLLPLLARQASISFSTFNLSSALGTLARATSFLNSRPWSSAVI*SAYIEHTSS 199
           G LP+L  +  +      ++S  G    +T  L+S    S+   S YI HTSS
Sbjct: 643 GQLPVLPAKMPVPTYAPPVASVEGLFTSSTGMLSSSATQSSSTTSGYITHTSS 695


>04_03_0068 -
           10631827-10631947,10632037-10632112,10632152-10633021,
           10650975-10651599
          Length = 563

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 218 YADQITADDQGREFKKDVALAKVPNAEDKLKVEKLIDACLANKGNS 355
           Y  ++ ADD G    KD    + PN   +  ++   D  L N+G++
Sbjct: 75  YKIKVVADDPGTSSSKDGDGKQAPNGSAQPSIKGATDGSLGNQGDN 120


>03_01_0096 +
           763850-764027,764873-765189,765262-765433,765513-765586,
           765658-765835,765917-766026,766122-766221,766305-766391,
           766505-766681,766847-767120,767201-767362,767450-767665,
           767744-767781,768044-768102,768214-768339,768415-768540,
           768642-768695,768789-768851,768924-768986,769079-769141,
           769232-769732
          Length = 1045

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 197 IEEVCSMYADQITADDQGREFKKDVALAKVPNAEDKLKVEK 319
           IE+V    ADQ+ +  Q  E  K +  A + N E+K+K  K
Sbjct: 306 IEQVVDRQADQLRSVSQKYENAKKLWAAAISNLENKIKAMK 346


>02_03_0326 + 17751485-17751955
          Length = 156

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 218 YADQITADDQGREFKKDVALAKVPNAEDKLKVEKLIDACLANKGNS 355
           Y  ++ ADD G    KD    + P+   +L  +   D+ L N+G++
Sbjct: 75  YKIKVVADDPGTSSSKDGDGKQAPDGSAQLSNKSATDSSLGNQGDN 120


>02_03_0029 -
           14077737-14077794,14077920-14078051,14078264-14078385,
           14078462-14078569,14079410-14079565,14080302-14080480,
           14081247-14081268
          Length = 258

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 313 READ*RLPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVPYLI--SVK*LGRV 486
           R+AD  L G   QQ  P  + L  +      EARS  +   +NP V + +  SV    + 
Sbjct: 181 RDADYPLVGNHFQQNRPQDVVLFIVGGTTYEEARSVALYNAANPGVRFFLGGSVVLNSKR 240

Query: 487 YLDDIMINRRILQS 528
           +LDD+   +RI +S
Sbjct: 241 FLDDLGEAQRISKS 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,398,344
Number of Sequences: 37544
Number of extensions: 327530
Number of successful extensions: 742
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)