Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0620
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 28   7.5  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          28   7.5  
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)                 28   7.5  
SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)             27   9.9  
SB_24560| Best HMM Match : Ank (HMM E-Value=0)                         27   9.9  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 296 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 424
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 201 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 70
           S +  +S S  SSVC  ++H+LS+ R   +C S     A+   P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 149 LFISFRLG--ETVGSVFLQVLLLLICEGLSQDNADDEHDK 36
           LF++F  G  E VG  F+     L CE    D  DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCTL-CEIAEDDENDDDHER 343


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 201  KKYALCMLIKSQLMTKDGNSRRTSLWLKCLMLK 299
            ++ ALC +I+++L+TKDG S   +  + C  L+
Sbjct: 1175 RRNALCEVIENRLVTKDGRSLSQAGRILCYRLR 1207


>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
          Length = 1084

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
 Frame = +2

Query: 89  EGELEETQSRLSLRDES**TIGEQTEDRRL*D*KRTIEEVCSMYADQIT------ADDQG 250
           EG+ E T  +LS  DES  T+   ++   L D +  I+E   ++   +       A D+ 
Sbjct: 16  EGDKENTSEKLSKTDESSNTVVAVSD---LNDKQYLIQEQWELFGWVLALHFGFRARDES 72

Query: 251 REFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHAL 418
           R+ K D+AL K P   ++  V +         G   HQ A+  +        +H+L
Sbjct: 73  RKLKWDIALEKEPETGNEDLVWRAERRSKTRHGEG-HQCAFFPIVVVKSPSSRHSL 127


>SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)
          Length = 283

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 314 EKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHALFL*THNPTQPFHTSLVLNSS 478
           +K++D  L ++      TA +YV+ YHE   KH+L   +H          V++S+
Sbjct: 197 KKIVDGILIDR-----YTAGSYVRHYHENKLKHSLISASHVQISGQQIGFVISSN 246


>SB_24560| Best HMM Match : Ank (HMM E-Value=0)
          Length = 248

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 104 LQVLLLLICEGLSQDNADDEHDKSLHDALCLGS 6
           ++V  LL+ +G + D  +D+ +  LH A C+GS
Sbjct: 64  MEVGRLLVEKGAALDKKNDKGETPLHMAACIGS 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,269,286
Number of Sequences: 59808
Number of extensions: 389249
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)