Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0620
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 0.53
Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical pr... 29 2.1
L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calciu... 29 2.1
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 6.5
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 6.5
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 6.5
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 28 6.5
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 6.5
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 28 6.5
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 28 6.5
Z99273-4|CAB16479.1| 124|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical p... 27 8.6
Z81097-11|CAB03170.2| 485|Caenorhabditis elegans Hypothetical p... 27 8.6
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41010-1|AAF98589.2| 313|Caenorhabditis elegans Serpentine rece... 27 8.6
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -2
Query: 482 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 369
RPS LT YG+ GL+ + K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197
>Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical
protein F10G8.5 protein.
Length = 190
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 191 RTIEEVCSMYADQIT--ADDQGREFKKDVALAKVPNAEDKLKVEKLIDACLANK 346
+ IE + M ++T ADD R+ K + N + +L +++ +D CLA+K
Sbjct: 125 KIIEAIYEMLGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVDGCLADK 178
>L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calcium
binding protein protein.
Length = 190
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 191 RTIEEVCSMYADQIT--ADDQGREFKKDVALAKVPNAEDKLKVEKLIDACLANK 346
+ IE + M ++T ADD R+ K + N + +L +++ +D CLA+K
Sbjct: 125 KIIEAIYEMLGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVDGCLADK 178
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 331 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 453
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 331 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 453
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 117 DCLSETKADEQLVNKLKTGDFKTENEPLK 203
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 117 DCLSETKADEQLVNKLKTGDFKTENEPLK 203
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 39 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 191
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 331 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 453
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 51 VCVVLAQALTDEQKENLKKHRADCLSETKA--DEQLVNKLKTGDFKTENE 194
V + LTD Q++NLK ++ ++ET + L N + +G F E E
Sbjct: 330 VVTTYEEKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 39 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 191
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>Z99273-4|CAB16479.1| 124|Caenorhabditis elegans Hypothetical
protein Y45F10C.4 protein.
Length = 124
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 168 TGDFKTENEPLKKYALCMLIKSQLMTKDGNSRRTSLW 278
+G F + +E K C L K K GN + T+LW
Sbjct: 19 SGSFSSISEEWKAVCECNLSKLNNHAKTGNCKTTALW 55
>Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical
protein K07A1.9b protein.
Length = 457
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 78 TDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGN 257
+++ K+NLK H AD ++ K + + K E + +K +++++ KD
Sbjct: 129 SEQSKKNLKSHEVSTKKMKDADRPVLTKKEIRNKKFEEKCRQKNLDPDVVRTERRQKDAA 188
Query: 258 SRRT 269
+RT
Sbjct: 189 RQRT 192
>Z81097-11|CAB03170.2| 485|Caenorhabditis elegans Hypothetical
protein K07A1.9a protein.
Length = 485
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 78 TDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGN 257
+++ K+NLK H AD ++ K + + K E + +K +++++ KD
Sbjct: 157 SEQSKKNLKSHEVSTKKMKDADRPVLTKKEIRNKKFEEKCRQKNLDPDVVRTERRQKDAA 216
Query: 258 SRRT 269
+RT
Sbjct: 217 RQRT 220
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 268 VLLEFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 92
+ + + + C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 5 IFFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U41010-1|AAF98589.2| 313|Caenorhabditis elegans Serpentine
receptor, class x protein19 protein.
Length = 313
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = -3
Query: 313 YFQFVFSIRHFSQSDVLLEFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAF 134
+++F+ +F Q L +P + CD ++ + + FN S V +LF N +A+
Sbjct: 139 FYEFLGCYLYFEQESWLFSYPENDVRCDQLTWYCDFIFNMSLVVA-----TLFLNLLAAY 193
Query: 133 VSER 122
+ +
Sbjct: 194 KARK 197
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = -3
Query: 244 VISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFSFCSSVRA*A 65
++S + Y F S +K + +LF CSS +V S C F F ++R+ A
Sbjct: 309 ILSAFSVRSSLTYLFRNSTRDVK--LVNLFRVCSSFWVIF--SHTCLFSLHFTDTIRSVA 364
Query: 64 KTTQTTNTIKVFMMHS 17
+ ++ + FMM+S
Sbjct: 365 RKGESVVGWRNFMMNS 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,873
Number of Sequences: 27780
Number of extensions: 301776
Number of successful extensions: 963
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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