Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0620
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    31   0.50 
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    31   0.87 
At5g45470.1 68418.m05586 expressed protein contains Pfam domain,...    29   2.0  
At3g19900.1 68416.m02520 expressed protein                             29   2.0  
At4g02710.1 68417.m00366 kinase interacting family protein simil...    29   3.5  
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ...    28   4.6  
At1g66130.1 68414.m07505 oxidoreductase N-terminal domain-contai...    28   4.6  
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    27   8.1  
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    27   8.1  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    27   8.1  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   8.1  
At1g77270.1 68414.m08999 expressed protein                             27   8.1  

>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -2

Query: 416 ERASGLSRGSISHNSRLFGEGCCLCWPGKRQS 321
           ERA+G S G    +SR     C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +3

Query: 81  DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGNS 260
           D  K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDG  
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGKE 133

Query: 261 RRT 269
             T
Sbjct: 134 DMT 136


>At5g45470.1 68418.m05586 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 866

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 316 LYFQFVFSIRHFSQS--DVLLEFPSLVISCDLISIHRAYFFNG 194
           +YF+F+  I HF +S  D+L EF    IS  L  +H+  F +G
Sbjct: 558 IYFEFISRIPHFIKSVWDILSEF--FDISDTLDMVHKTLFVHG 598


>At3g19900.1 68416.m02520 expressed protein
          Length = 222

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 167 LQFVHQLFISFRLGETVGSVFLQVLLLLICEGLSQDNADDEHDKSLHD 24
           L F H L +    G+T    F ++  ++  EG + DN+DDE  +SL D
Sbjct: 42  LAFSHSLCLKTTYGKTDRRKFSRICSIVDDEG-NLDNSDDEEKESLDD 88


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 437 DYVFTRKERASGLSRGSISHNSRLFGEGCCL 345
           DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 574

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 513 PINHDIV*INTSELFNTNEVWNGWVGLCVYKKRACFGSFS 394
           P NH ++ I+ ++ ++   V NG  GLC Y  R  F + S
Sbjct: 19  PCNHMLLYIHLTQSYSYCAVCNGDYGLCYYCSRCNFQAHS 58


>At1g66130.1 68414.m07505 oxidoreductase N-terminal
           domain-containing protein similar to AX110P [Daucus
           carota] GI:285739; contains Pfam profile PF01408:
           Oxidoreductase family NAD-binding Rossmann fold
          Length = 364

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 260 KKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 373
           KK   L + P A+D  ++EK+++AC  N       T W
Sbjct: 95  KKKHVLVEKPPAQDATELEKIVEACEYNGVQFMDGTIW 132


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 230 ITADDQGREFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK 409
           ++++D    F+K + L  +P  +D+  +  L++ CL  K  +   T      C H+K+ K
Sbjct: 518 MSSEDYIDAFEKLLRL-DLPGKQDREIMRVLVECCLQEKAFNKFYTVLASKLCEHDKNHK 576

Query: 410 HAL 418
             L
Sbjct: 577 FTL 579


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 50  DEHDKSLHDALCLGSC 3
           DE ++SLHDALC+  C
Sbjct: 396 DEAERSLHDALCVVRC 411


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 328 RLPGQQRQQPSPNSLELCEMLPRERPE 408
           R P ++R++ +PN+LE    LP++  E
Sbjct: 114 RAPAKEREEIAPNTLENVSKLPKQHQE 140


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 290 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 397
           ++  KL++ KL D  L +   +P +  WN  KC  E
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 102 KKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ---LMTKDGNSRRTS 272
           KK +   +++T   ++++      D  T+    K  +LC  + +    L+ +DG ++RT+
Sbjct: 174 KKPKKSVVAKTIVWQEIIEIESATDTDTDEVGGKTLSLCGKVDASGDDLLARDGKTKRTN 233

Query: 273 LWLKCL 290
           L + C+
Sbjct: 234 LQIVCV 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,027
Number of Sequences: 28952
Number of extensions: 279594
Number of successful extensions: 700
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)