Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0618
         (573 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000065EB5B Cluster: Uncharacterized protein C21orf5....    33   6.3  
UniRef50_Q81WZ9 Cluster: Membrane protein, putative; n=11; Bacil...    33   6.3  
UniRef50_Q4RRL6 Cluster: Chromosome 16 SCAF15002, whole genome s...    32   8.3  

>UniRef50_UPI000065EB5B Cluster: Uncharacterized protein C21orf5.;
           n=1; Takifugu rubripes|Rep: Uncharacterized protein
           C21orf5. - Takifugu rubripes
          Length = 2362

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 301 CISLSVLLAPGSSSRKDECIEARKLAELSRLF*QFKNVLPYDIYF-IASLYL 149
           C SLS    P +  R D C +A  + E+S L     +VLP ++Y  I SL+L
Sbjct: 482 CTSLSNKDDPPTPPRPDRCHQAPSVTEMSNLIIFLLDVLPLELYADIQSLFL 533


>UniRef50_Q81WZ9 Cluster: Membrane protein, putative; n=11; Bacillus
           cereus group|Rep: Membrane protein, putative - Bacillus
           anthracis
          Length = 385

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
 Frame = -1

Query: 474 IIYGGILTTATKVHSIA*LILFNTFTI*IRTWVLGPDCRQQTRW---LLRKK----CKTY 316
           I+Y  +L T T   SI+ ++L +T      TW+ GP  R   RW   +LRK     CK Y
Sbjct: 327 ILYSLLLFTITATISISAMVLCSTLPF--HTWITGPSPRATVRWAKIVLRKHHEKVCKPY 384


>UniRef50_Q4RRL6 Cluster: Chromosome 16 SCAF15002, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 16 SCAF15002, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 98

 Score = 32.3 bits (70), Expect = 8.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 300 VFHYLYSSLPVPQAGRMNASKQESWRNLAAS 208
           V H+L   LPVP+A R N      W+NL+ S
Sbjct: 25  VVHHLLQRLPVPKAVRQNDFHSWKWKNLSVS 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,301,651
Number of Sequences: 1657284
Number of extensions: 8533222
Number of successful extensions: 15939
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15938
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)