Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0618
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+ antipo...    28   5.1  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    27   6.7  
At1g74820.1 68414.m08668 cupin family protein similar to germin-...    27   6.7  
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    27   8.9  

>At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+
           antiporter (NHX1) identical to Na+/H+ exchanger
           [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium
           proton exchanger Nhx1 [Arabidopsis thaliana]
           gi|4324597|gb|AAD16946; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 538

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = -3

Query: 457 SNYGNQSSFHSLINTI*YIYYLDTDMGARTGLSATNALVAKKEM*NLQHKTNCISLSVLL 278
           ++  ++++FH L N + Y++ L T +GA TGL   +A V KK           ++L +L+
Sbjct: 201 THLNHEAAFHLLGNFL-YLFLLSTLLGAATGL--ISAYVIKKLYFGRHSTDREVALMMLM 257

Query: 277 A 275
           A
Sbjct: 258 A 258


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 455 RIPP*IINTLKIPRRSYRYXPMFXKHTARV 544
           + PP  +NT+++ +R+ RY  +  +HT +V
Sbjct: 301 KYPPYPLNTIELEKRASRYFRLSSEHTMKV 330


>At1g74820.1 68414.m08668 cupin family protein similar to
           germin-like protein SP|P92995; contains Pfam profile
           PF00190: Cupin
          Length = 227

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 320 LTTQNELYFIICTPRSRFLKPEG*MHRSKKVGGT*PPLLTI 198
           LTT   LY  +  P   F+ P G +H    VG T   LLT+
Sbjct: 140 LTTNYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTV 180


>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 protein,
            Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 1    RHERLS-LCYT*NDINTSTETDLLKSENRKSIFSM*VKLIKXSM 129
            RHE    LC   N + T   TDLLKS+  K+     +KL +  +
Sbjct: 1037 RHEEEGVLCTIDNILRTGKATDLLKSQEEKTKLQSEMKLSREKL 1080


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,462
Number of Sequences: 28952
Number of extensions: 193799
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)