Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0612
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525...    32   0.34 
03_06_0190 + 32219878-32220465,32220551-32220652,32220730-322207...    27   7.4  
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    27   7.4  
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    27   9.8  
10_01_0104 + 1271635-1271878,1272542-1273134                           27   9.8  
08_02_0812 - 21444112-21444273,21444374-21444488,21445369-214454...    27   9.8  
06_01_0639 + 4641665-4642846,4642929-4643360                           27   9.8  

>03_02_0045 -
           5251234-5251305,5251362-5251419,5252256-5252539,
           5252836-5253019,5253564-5253814,5253921-5254024,
           5254143-5254281
          Length = 363

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +1

Query: 295 SFTLGSWQVYRWQWKLGLIDMMQAKSNAVPID----MPKDFS---ELEKMEYXPVKXXXE 453
           +F LGSWQ++R Q K+ ++D    +    PI      P D S   +    E+  +    +
Sbjct: 67  TFGLGSWQLFRRQEKIEMLDYRTRRLEMEPIAWNQMAPSDLSAGVDPATPEFRRIVCEGD 126

Query: 454 FLHXXEILIGPRA 492
           F     + +GPR+
Sbjct: 127 FDEERSVFVGPRS 139


>03_06_0190 +
           32219878-32220465,32220551-32220652,32220730-32220795,
           32220977-32221042,32221135-32221422,32222178-32222276,
           32222821-32222914,32223923-32223975
          Length = 451

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 372 GFSLHHVNEPQLPLPSVHLP*TKSKGSNW 286
           G S HH   P LP P+   P     GS+W
Sbjct: 87  GPSSHHAPPPDLPPPAARPPMRSGIGSSW 115


>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 294 SNWYHQ*DPFVYFIGSSFLLTFCDRIIFAIFVLNLTLLTDPFLIKVLXMIF 142
           S+W+   D  V    +S +L +  +I+F   V  L  L    L+KVL   F
Sbjct: 456 SSWHFMFDKNVQRETNSPVLPYVQKILFCFLVATLIRLVKTLLLKVLASSF 506


>11_06_0180 +
           20962420-20962528,20962618-20962699,20962831-20962948,
           20963024-20963062,20963181-20963343,20963706-20963921,
           20964039-20964116,20964244-20964500,20964544-20964575,
           20964815-20965197,20965262-20965831,20966250-20966343,
           20966365-20966541,20966761-20966963,20968244-20968301,
           20969126-20969381,20969553-20969789
          Length = 1023

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 362 CIMSMSPSFHCHLYTCHEPRVKE 294
           C+    PSFH  LY  H+  VKE
Sbjct: 867 CLPLNEPSFHSWLYDSHKKMVKE 889


>10_01_0104 + 1271635-1271878,1272542-1273134
          Length = 278

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 368 LACIMSMS-PSFHCHLYTCHEPRVKEVTGIISKIHLYIS 255
           + C   +S P+  CHLY CHE  +   T  I + H+ +S
Sbjct: 81  IGCTHEISLPNSGCHLYNCHELTIPLQT--IEESHVGVS 117


>08_02_0812 -
           21444112-21444273,21444374-21444488,21445369-21445487,
           21446589-21446757,21447082-21447233,21447349-21447492,
           21447575-21447687,21448265-21448316,21448408-21448494
          Length = 370

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 253 DEIYKWILLMIPVTSFTLGSWQVYRWQWKL 342
           D++  W  ++I VTS+ LG + + +  W L
Sbjct: 89  DDLKSWTSVLISVTSYALGIFLISKAPWYL 118


>06_01_0639 + 4641665-4642846,4642929-4643360
          Length = 537

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +2

Query: 71  LVGYKKEGSRYRMXNNIFKISRNLNIIXNTFIKKGSVSNVRFNTNIANIMRSQKVKR 241
           ++ +   GS YR    +F   R L  I  + +    +   ++    ANI R Q  K+
Sbjct: 220 VISHTAFGSSYRQGKEVFVAQRELQYIAMSALNSVRIPGSQYIPTKANIRRRQLAKK 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,032
Number of Sequences: 37544
Number of extensions: 197258
Number of successful extensions: 477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)