Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0612
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)                  29   2.5  
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)                29   3.3  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        27   7.6  

>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 285

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 380 TALDLACIMSMSPSFHCHLY-TCHEPRVKEVTGIISKIH 267
           TAL    ++ +SP +   +Y TCH P  K  T  ++ +H
Sbjct: 139 TALHARRVLHLSPPYMQDVYFTCHRPTCKTCTSPVTALH 177



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 380 TALDLACIMSMSPSFHCHLY-TCHEPRVKEVTGIISKIH 267
           TAL    ++ +SP +   +Y TCH P  K  T  ++ +H
Sbjct: 174 TALHARRVLHLSPPYMQDVYFTCHRPTCKTCTSPVTALH 212


>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
          Length = 697

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 265 KWILLMIPVTSFTLGSWQVYRWQWK 339
           KW  L  P+T F    W  + WQW+
Sbjct: 576 KW--LYFPITPFAANGWVWFGWQWR 598


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 274  LLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPID 390
            +L++ + ++ +GSW+  +   KLGL   +    N  P D
Sbjct: 961  MLLVGIYNYGMGSWEAIKADTKLGLSTKILPPGNLKPQD 999


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,197
Number of Sequences: 59808
Number of extensions: 229487
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)