Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0612
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006651-9|AAF39867.1| 323|Caenorhabditis elegans Surfeit homol... 73 1e-13
Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical pr... 27 6.7
U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ... 27 6.7
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF003384-11|AAL08042.1| 487|Caenorhabditis elegans Hypothetical... 27 6.7
AF003384-10|AAB54241.3| 351|Caenorhabditis elegans Hypothetical... 27 6.7
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 8.8
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 8.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 8.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 8.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 8.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 8.8
>AC006651-9|AAF39867.1| 323|Caenorhabditis elegans Surfeit homolog
protein 1 protein.
Length = 323
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Frame = +1
Query: 229 EGQKKRRTDEIYKW-----ILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDM 393
+G K +++ + KW ++L IPV +F+LG WQ +R +WKL LI+ ++ + N ++
Sbjct: 68 DGGKSKKSKKSIKWSTGSVLMLTIPVFAFSLGIWQTFRLKWKLDLIEHLKGRLNQTAQEL 127
Query: 394 PKDFS--ELEKMEYXPVKXXXEFLHXXEILIGPR 489
P+D S LE +EY V EFLH E +I PR
Sbjct: 128 PEDLSCESLEPLEYCRVTVTGEFLHEKEFIISPR 161
>Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical
protein R07E3.5a protein.
Length = 512
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +1
Query: 271 ILLMIPVTSFTLGSWQ------VYRWQWKLGLIDMMQAKSNAVPIDMPKDF 405
+L+ + VT TLG + VY ++W L + + + +V DMP+DF
Sbjct: 12 LLIFLAVTGKTLGLREYYVNTLVYIFEWGATLNEQYEEEEGSVEEDMPEDF 62
>Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical
protein K04C1.6 protein.
Length = 332
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 238 KKRRTDEIYKWILLMIPVTSFTL 306
K TDEI WI+++IP S L
Sbjct: 257 KSESTDEILSWIVILIPFASDAL 279
>Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical
protein K04C1.6 protein.
Length = 332
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 238 KKRRTDEIYKWILLMIPVTSFTL 306
K TDEI WI+++IP S L
Sbjct: 257 KSESTDEILSWIVILIPFASDAL 279
>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
related protein 10 protein.
Length = 1382
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Frame = -1
Query: 446 LXFTGX--YSIFSNSEKSLGMSIGTALDLA--CIMSMSPSFHCHLYTCHEPRVKEVTGII 279
L FTG Y I+ ++ S G A+++ C+ S+S FH + T + KE+ ++
Sbjct: 350 LIFTGALCYGIWRVADNSPGRLCALAINMLYMCVTSISIGFHMNGATRAKDNAKEICEVL 409
Query: 278 S---KIHLYISSV 249
+ KI + ++S+
Sbjct: 410 NEQPKIEVELASI 422
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 312 MASVQMAMEAGAH*HDAS*IQCCPNR 389
MA+V+ AME H AS CCPNR
Sbjct: 303 MANVKTAMEGVYDIHPASDGICCPNR 328
>AF003384-11|AAL08042.1| 487|Caenorhabditis elegans Hypothetical
protein K07B1.7b protein.
Length = 487
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 16 YLKVYNLCYLPTTYINKSLGRLQKRRK 96
+L+ LC LPTT I+K + QKR+K
Sbjct: 174 FLEQIRLCRLPTTVISKLGIQTQKRKK 200
>AF003384-10|AAB54241.3| 351|Caenorhabditis elegans Hypothetical
protein K07B1.7a protein.
Length = 351
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 16 YLKVYNLCYLPTTYINKSLGRLQKRRK 96
+L+ LC LPTT I+K + QKR+K
Sbjct: 22 FLEQIRLCRLPTTVISKLGIQTQKRKK 48
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 446 LXFTGXYSIFSNSEKSLGMSIGTALDLACIMSMSPSFHCHLYTCHEPRVKEVTGIISKIH 267
L G +F+ ++ +SIG L L+C + SP H Y+ E K T I S
Sbjct: 3080 LTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TTKVETKITSSSR 3138
Query: 266 LYI 258
+ I
Sbjct: 3139 IAI 3141
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 446 LXFTGXYSIFSNSEKSLGMSIGTALDLACIMSMSPSFHCHLYTCHEPRVKEVTGIISKIH 267
L G +F+ ++ +SIG L L+C + SP H Y+ E K T I S
Sbjct: 2440 LTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TTKVETKITSSSR 2498
Query: 266 LYI 258
+ I
Sbjct: 2499 IAI 2501
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 446 LXFTGXYSIFSNSEKSLGMSIGTALDLACIMSMSPSFHCHLYTCHEPRVKEVTGIISKIH 267
L G +F+ ++ +SIG L L+C + SP H Y+ E K T I S
Sbjct: 3080 LTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TTKVETKITSSSR 3138
Query: 266 LYI 258
+ I
Sbjct: 3139 IAI 3141
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 446 LXFTGXYSIFSNSEKSLGMSIGTALDLACIMSMSPSFHCHLYTCHEPRVKEVTGIISKIH 267
L G +F+ ++ +SIG L L+C + SP H Y+ E K T I S
Sbjct: 3080 LTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TTKVETKITSSSR 3138
Query: 266 LYI 258
+ I
Sbjct: 3139 IAI 3141
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 446 LXFTGXYSIFSNSEKSLGMSIGTALDLACIMSMSPSFHCHLYTCHEPRVKEVTGIISKIH 267
L G +F+ ++ +SIG L L+C + SP H Y+ E K T I S
Sbjct: 2440 LTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TTKVETKITSSSR 2498
Query: 266 LYI 258
+ I
Sbjct: 2499 IAI 2501
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 446 LXFTGXYSIFSNSEKSLGMSIGTALDLACIMSMSPSFHCHLYTCHEPRVKEVTGIISKIH 267
L G +F+ ++ +SIG L L+C + SP H Y+ E K T I S
Sbjct: 3080 LTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TTKVETKITSSSR 3138
Query: 266 LYI 258
+ I
Sbjct: 3139 IAI 3141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,356,580
Number of Sequences: 27780
Number of extensions: 187321
Number of successful extensions: 532
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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