Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0612
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit ...    41   6e-04
At5g65660.1 68418.m08259 hydroxyproline-rich glycoprotein family...    28   4.7  

>At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit 1
           GB:AAF19609 from [Arabidopsis thaliana]
          Length = 354

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
 Frame = +1

Query: 265 KW--ILLMIP-VTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVP----IDMPKDFSELEKM 423
           KW  +LL +P   +F LGSWQ+ R + K   ++  Q + N  P    ID P D   L  +
Sbjct: 72  KWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKLNIDHPLD-KNLNAL 130

Query: 424 EYXPVKXXXEFLHXXEILIGPRA 492
           E+  V     F     I +GPR+
Sbjct: 131 EFRRVSCKGVFDEQRSIYLGPRS 153


>At5g65660.1 68418.m08259 hydroxyproline-rich glycoprotein family
           protein
          Length = 136

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 410 SEKSLGMSIGTALDLACIMSMSPSFHC 330
           S  SLG  +GTAL L  I S+S  F C
Sbjct: 15  SRPSLGFPLGTALLLIIIFSLSGIFSC 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,694,319
Number of Sequences: 28952
Number of extensions: 172616
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)