Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0610
         (485 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   3.4  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   4.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.9  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 4/13 (30%), Positives = 11/13 (84%)
 Frame = -3

Query: 222 LYVFEEMWVFLPW 184
           +++F+ +W+F+ W
Sbjct: 150 VFIFDNVWLFILW 162


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 383 LSIHTCFSPLNWQRE*IHYYHSICVHF 303
           +++H CF+   +    I ++ +IC  F
Sbjct: 58  VTLHVCFNSYMYAFTHIFFFFAICCDF 84


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 189 GERPTFLQRHKD 224
           GE P FLQ H++
Sbjct: 471 GELPVFLQEHRN 482


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 189 GERPTFLQRHKD 224
           GE P FLQ H++
Sbjct: 471 GELPVFLQEHRN 482


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,901
Number of Sequences: 336
Number of extensions: 3054
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)