Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0610
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 66 2e-12
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 42 7e-05
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 29 0.49
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 27 1.1
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 2.6
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c... 26 3.5
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 25 4.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.1
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 6.1
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 8.0
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 66.5 bits (155), Expect = 2e-12
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = +3
Query: 198 PTFLQRHKDISSCIAEDGDHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVN 377
P F + K + + + H G LEVMG + GKV+ ++I++DSFALPVEGTETRVN
Sbjct: 29 PEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQGKVEGASLIILDSFALPVEGTETRVN 88
Query: 378 AQAQXYEYMTAY 413
A + EY Y
Sbjct: 89 AHEEAQEYSVQY 100
Score = 50.4 bits (115), Expect = 1e-07
Identities = 17/44 (38%), Positives = 35/44 (79%)
Frame = +1
Query: 121 SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMV 252
+ +++++R+D+++++ + PW+ DP FF+ +KISA+ALLKM+
Sbjct: 3 NQLENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALLKML 46
Score = 30.7 bits (66), Expect = 0.12
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 449 ENAIGWYHSHP 481
EN IGWYHSHP
Sbjct: 111 ENVIGWYHSHP 121
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 41.5 bits (93), Expect = 7e-05
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNA 380
H R G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 43 HGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEA 85
Score = 29.5 bits (63), Expect = 0.28
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
E +GWYHSHPG
Sbjct: 105 EMVVGWYHSHPG 116
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 28.7 bits (61), Expect = 0.49
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 252 DHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQXYEYMTAYIE 419
+ + G V+G+LLG+ + + + V +S+A+P E E + + +M + E
Sbjct: 32 NRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNE 87
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -1
Query: 188 HGLAARISCCCFLSYRYISSTFETVSMLFAITQVF*AIDACASALVD 48
H A + C SYR ++ +E + +L +F +C+ +VD
Sbjct: 588 HSKAVQQEFCSLYSYRIVNLLWEILGILLTPVLLFFTFPSCSQDIVD 634
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 171 DILLLFLVVSIYIINVRNGFNVIRHHPSFLSNR 73
D+L+LF V+I +INV + + HH + S R
Sbjct: 188 DLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLR 220
>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
catalytic subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 3.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 134 IYIDTTRNNNRISSPLNH 187
IY+D T +N +I+ PL H
Sbjct: 90 IYVDPTSSNKKITIPLGH 107
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 186 WFSGEDILLLFLVVSIYIINVRNGFNVIRH 97
W I+ +F ++ IY+I NGF I +
Sbjct: 77 WAKRWSIVFMFCLMQIYVIWTSNGFGSIEY 106
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 364 SVPSTGSANESITIIVFASTLPSNSPMTSSVPPDLA*SPSSA 239
S PS+ S++ + + S++PS S +SS L+ S SS+
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 31 LSHTMASTSADAQASIAQKTWVMANNIETVSNVDDIYRYDKKQQ 162
++ T+ TS + + +AQ T++ VSNV+ +RY + Q
Sbjct: 212 ITGTVTRTS-EVRPELAQGTFICEECHTVVSNVEQAFRYTEPTQ 254
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 8.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 195 RPTFLQRHKDISSCIA-EDGDHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETR 371
R L+ D+ IA E + R +E+ L+ DA ++++ PV+ T TR
Sbjct: 76 RLKLLEEKIDLLLDIATETSEFKRENKAIELPSLVTQIKDAESIVIKHRQGSPVDNTPTR 135
Query: 372 V 374
+
Sbjct: 136 I 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,880
Number of Sequences: 5004
Number of extensions: 46616
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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