Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0610
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 85 2e-17
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 42 2e-04
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 42 2e-04
11_06_0372 + 22781438-22781977 29 2.0
02_01_0065 - 477465-477512,477593-477685,477777-478316,478667-47... 29 2.6
10_03_0035 - 7265037-7265455,7265684-7265812,7265909-7265951,726... 28 3.5
07_03_0380 + 17460078-17460782,17461194-17461252,17461388-174614... 28 4.6
10_07_0157 - 13556708-13556813,13556831-13557001,13559558-135597... 27 6.0
08_02_1486 - 27472226-27472867,27472951-27473862 27 6.0
03_05_0765 - 27536666-27536767,27536854-27536976,27537161-275373... 27 6.0
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 27 8.0
09_06_0120 - 20973635-20974879 27 8.0
05_07_0078 - 27536211-27536282,27536396-27536470,27537411-275375... 27 8.0
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQXYEYMTAY 413
HAR+GGT+EVMGL+ GK + + ++VMD+FALPVEGTETRVNAQA YEYM Y
Sbjct: 65 HARAGGTIEVMGLMQGKCEGDAIVVMDAFALPVEGTETRVNAQADAYEYMVEY 117
Score = 64.5 bits (150), Expect = 4e-11
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = +1
Query: 76 IAQKTWVMANNIETVSN----VDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALL 243
+A++TW + NNI ++ +D IYRYD+ Q + KPW DPH F+ KISALALL
Sbjct: 1 MARQTWELENNIPAAASDPDALDAIYRYDEAAQARVQQEKPWANDPHPFRRAKISALALL 60
Query: 244 KMVI 255
KMV+
Sbjct: 61 KMVV 64
Score = 32.7 bits (71), Expect = 0.16
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
EN +GWYHSHPG
Sbjct: 153 ENVVGWYHSHPG 164
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNA 380
H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 42 HGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEA 84
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
E +GWYHSHPG
Sbjct: 104 EMVVGWYHSHPG 115
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNA 380
H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 42 HGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEA 84
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
E +GWYHSHPG
Sbjct: 104 EMVVGWYHSHPG 115
>11_06_0372 + 22781438-22781977
Length = 179
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 40 TMASTSADAQASIAQKTWVMANNIETVSNVDDI 138
T +TSA A +A+ W++A E +N DDI
Sbjct: 31 TTTTTSAMAPLPLAEVKWILAQKREPYTNPDDI 63
>02_01_0065 -
477465-477512,477593-477685,477777-478316,478667-478670,
479494-480063,480167-480204
Length = 430
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 399 IHXLVLEHSHVFQSPQLAARM 337
+H L +EHSH+ Q+PQ + M
Sbjct: 113 VHDLAVEHSHLLQTPQTSRLM 133
>10_03_0035 -
7265037-7265455,7265684-7265812,7265909-7265951,
7266321-7266344
Length = 204
Score = 28.3 bits (60), Expect = 3.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 72 CLCIGTC*CHC 40
CLC+G C CHC
Sbjct: 152 CLCLGQCRCHC 162
>07_03_0380 +
17460078-17460782,17461194-17461252,17461388-17461492,
17461732-17461867,17461919-17461939
Length = 341
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 233 LHC*RW*SCKIWWHTGGHGTITW 301
L C RW +C+ +HTGG+ + TW
Sbjct: 16 LACARW-ACQHCFHTGGYDSETW 37
>10_07_0157 -
13556708-13556813,13556831-13557001,13559558-13559757,
13559809-13559835
Length = 167
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +1
Query: 13 YILNXILSHTMASTSADAQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWE 192
Y+L + A+ +A A S++ +N + S + I R DK + A W+
Sbjct: 77 YLLEHLQKWESAALNAPAHYSVSVAV-CRSNGESSPSTNEQIMRKDKAGYHCLYKANCWQ 135
Query: 193 KDPHFFKDIKISAL 234
FK+ KIS L
Sbjct: 136 NMHECFKNRKISRL 149
>08_02_1486 - 27472226-27472867,27472951-27473862
Length = 517
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 351 LAARMNPLLS*YLRPLYQVIVP*PPVCHQILHDHHL 244
LAAR P+ S L V+V P + ++L DH L
Sbjct: 62 LAARYGPIFSIRLGSKLGVVVTSPALAREVLRDHDL 97
>03_05_0765 -
27536666-27536767,27536854-27536976,27537161-27537355,
27538144-27538272,27539025-27539066,27539067-27539229,
27539357-27539492,27539883-27540287,27540419-27540505,
27540877-27541054
Length = 519
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 216 HKDISSCIAEDGDHARSGGTLEVMGLL 296
H+D++S AED H G L+ GLL
Sbjct: 146 HEDVASVSAEDSAHGGGGRILDDCGLL 172
>12_01_0199 -
1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 399 IHXLVLEHSHVFQSPQLAARM 337
+H L +EH+H+ Q+PQ + M
Sbjct: 588 VHDLAVEHNHLLQTPQTSHLM 608
>09_06_0120 - 20973635-20974879
Length = 414
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 346 SANESITIIVFASTLPSNSPMTSSVPPDLA*SPSSAMQELISL 218
S + + I + +LP+ P SS PP +P S+ +E +SL
Sbjct: 89 SPSRAAWISAYRGSLPTFLPSPSSAPPPPLPAPISSTKEALSL 131
>05_07_0078 -
27536211-27536282,27536396-27536470,27537411-27537512,
27538153-27538233,27538322-27538744
Length = 250
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 441 SQTVLGQPQYTQSCIHXLVLEHS 373
SQTV+G+P + +H +V EH+
Sbjct: 181 SQTVIGRPTLPDATVHAVVEEHA 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,128,038
Number of Sequences: 37544
Number of extensions: 311316
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -