Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0610
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)                      102   1e-22
SB_33626| Best HMM Match : Mov34 (HMM E-Value=0.71)                    38   0.004
SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)                   30   0.88 
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          29   2.7  
SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)                     28   4.7  
SB_35558| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_53673| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   8.2  

>SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)
          Length = 195

 Score =  102 bits (245), Expect = 1e-22
 Identities = 48/57 (84%), Positives = 52/57 (91%)
 Frame = +3

Query: 255 HARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQXYEYMTAYIEAA 425
           HARSGG LEVMGL+LGKVD +TMIVMD+FALPVEGTETRVNAQA  YEYM AYIE+A
Sbjct: 65  HARSGGNLEVMGLMLGKVDGDTMIVMDAFALPVEGTETRVNAQAAAYEYMAAYIESA 121



 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 40/62 (64%), Positives = 57/62 (91%)
 Frame = +1

Query: 70  ASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKM 249
           +++A K+W +ANNIE V+ +D+I++YD++QQQ+IL AKPW+KDPH+FK+IKISALALLKM
Sbjct: 3   SAMAMKSWELANNIENVNGIDEIFKYDRQQQQEILQAKPWQKDPHYFKNIKISALALLKM 62

Query: 250 VI 255
           V+
Sbjct: 63  VM 64



 Score = 34.7 bits (76), Expect = 0.041
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 449 ENAIGWYHSHPG 484
           ENAIGWYHSHPG
Sbjct: 128 ENAIGWYHSHPG 139


>SB_33626| Best HMM Match : Mov34 (HMM E-Value=0.71)
          Length = 95

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +3

Query: 261 RSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETR 371
           R+G  +EVMGL+LG+ VD  T+ V+D FA+P  GT  R
Sbjct: 2   RAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTVCR 39


>SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)
          Length = 444

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 64  AQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEK-DPHFFKDIKISA 231
           A A++  K W   +++       DI   +K  QQDI+ +K WEK DP  +K+ K+SA
Sbjct: 80  ANATVNLKLWRSWDSLVAAVCKGDI---EKTFQQDIVISKEWEKLDPVLYKN-KMSA 132


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 440 PKPCWGSLNIRSH-VFIXLCLSIHTCFSPLNWQRE*IHYYHS 318
           PKPC+  L + +   F  L LS   CF+PL    +   YY S
Sbjct: 699 PKPCFTFLTLSTKPCFTPLTLSTKLCFTPLTLSPKPNAYYAS 740


>SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)
          Length = 339

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 417 QYTQSCIHXLVLEHSHVFQSPQLAARMNPLLS*Y-LRPLYQVIVP*PPVCHQILHDHH 247
           Q T    + L    SH  ++PQ + R+ P++S +  + +Y V      +  +  HDHH
Sbjct: 115 QLTSLLSNILAESVSHTHENPQKSQRLPPIISSFSAKQIYSVADKHHGIPAEPKHDHH 172


>SB_35558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 275 CATRSCMITIFSNARADIFMSLKKCGSFSHGLAARISCCCFLSYRYI 135
           C    CM  + S+  +D+ + +     FS  +   IS   ++ YRYI
Sbjct: 112 CIRFGCMCIVISDFTSDVTLPIPDTLMFSLYIEVVISSIAYVEYRYI 158


>SB_53673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 198 VFLPWFSGEDILLLFLVVSIYIINVRNGFNV 106
           +F   F  E +LLLFLVV++ ++ + +G N+
Sbjct: 160 LFTNVFKKEHLLLLFLVVNVAVLLIISGTNL 190


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 127  VDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLK 246
            + D  +YD+ +QQ I  + PW  DP    D    ALA LK
Sbjct: 913  IQDNLQYDENKQQWI-TSYPWLTDPTTLPDNYDIALATLK 951


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,296,227
Number of Sequences: 59808
Number of extensions: 355413
Number of successful extensions: 994
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)