Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0610
(485 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 91 3e-19
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 45 3e-05
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 42 2e-04
Z29116-4|CAA82370.2| 206|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81047-14|CAH04642.1| 357|Caenorhabditis elegans Hypothetical p... 27 5.5
AL033510-4|CAA22070.2| 343|Caenorhabditis elegans Hypothetical ... 27 5.5
AL032663-8|CAD89752.1| 321|Caenorhabditis elegans Hypothetical ... 27 5.5
AF016428-1|AAO26001.1| 330|Caenorhabditis elegans Serpentine re... 27 5.5
Z68750-6|CAA92970.1| 1035|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z68300-4|CAA92619.1| 1035|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr... 27 9.5
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 27 9.5
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 27 9.5
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 91.5 bits (217), Expect = 3e-19
Identities = 40/55 (72%), Positives = 47/55 (85%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQXYEYMTAYIE 419
HA+ GG LE+MGLL G++DAN+ I++D FALPVEGTETRVNAQAQ YEYMT Y E
Sbjct: 69 HAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSE 123
Score = 78.2 bits (184), Expect = 3e-15
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = +1
Query: 70 ASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKM 249
+S+ Q+ W NN++ NVD I+ Y+ KQQ +I AKPW+KDPH+FK IKISA+ALLKM
Sbjct: 10 SSVPQRNWEKENNVQ---NVDSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKM 66
Query: 250 VI 255
+
Sbjct: 67 TM 68
Score = 30.3 bits (65), Expect = 0.77
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
E +GWYHSHPG
Sbjct: 132 EKVVGWYHSHPG 143
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 44.8 bits (101), Expect = 3e-05
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQXYE 398
HARSG LEVMGL+LG VD T+ V D FA+P GT V + Y+
Sbjct: 42 HARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQ 90
Score = 32.7 bits (71), Expect = 0.15
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
EN +GWYHSHPG
Sbjct: 104 ENVVGWYHSHPG 115
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNA 380
H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 46 HGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEA 88
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
E +GWYHSHPG
Sbjct: 108 EMVVGWYHSHPG 119
>Z29116-4|CAA82370.2| 206|Caenorhabditis elegans Hypothetical
protein ZK507.4 protein.
Length = 206
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 294 IVP*PPVCHQILHDHHLQQCKS*YLYVFEEMW 199
IVP P C+ +H H +QCK Y Y + W
Sbjct: 127 IVPCRPNCNVSVHPHCTRQCKCEYEYHRMQKW 158
>Z81047-14|CAH04642.1| 357|Caenorhabditis elegans Hypothetical
protein C41G6.16 protein.
Length = 357
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = -3
Query: 168 ILLLFLVVSIYIINVRNGFNVIRHHPSFLSNRCLCIG 58
I++L ++ +I + G N+++H+P+F+ + +CIG
Sbjct: 54 IVMLGMLSNILHFLILRG-NILKHNPTFIMIKVVCIG 89
>AL033510-4|CAA22070.2| 343|Caenorhabditis elegans Hypothetical
protein Y40H7A.6 protein.
Length = 343
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 222 LYVFEEMWVFLPWFSGEDILLLFLVVSIYIINVRNGFNVIRHHPSFL 82
L +W+ + +F I+LL SIY + V NV FL
Sbjct: 21 LEAMNSIWIKINFFLSTSIILLTFFASIYAVRVLKFHNVYSSGTQFL 67
>AL032663-8|CAD89752.1| 321|Caenorhabditis elegans Hypothetical
protein Y75B12B.10 protein.
Length = 321
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = -3
Query: 168 ILLLFLVVSIYIINVRNGFNVIRHHPSFLSNRCLCIG 58
I++L ++ +I + G N+++H+P+F+ + +CIG
Sbjct: 29 IVMLGMLSNILHFLILRG-NILKHNPTFIMIKVVCIG 64
>AF016428-1|AAO26001.1| 330|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 66 protein.
Length = 330
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -2
Query: 328 TIIVFASTLPSNSPMTSSVPPDLA*SPSSAMQELISLCL*RNVGLSPM 185
T++VF+S L MT S+PP L S+ ++ + C RN L+P+
Sbjct: 269 TLMVFSSDL-----MTFSLPPVLLFFDSNVQRQFLPKCCQRNYYLAPV 311
>Z68750-6|CAA92970.1| 1035|Caenorhabditis elegans Hypothetical
protein T22B3.2b protein.
Length = 1035
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 260 CMITIFSNARADIFMSLKKCGSFSHGLAAR 171
C+I + + +DI+M++K+ HG+ ++
Sbjct: 655 CIIVVLQSKNSDIYMTVKEQSDIVHGIMSQ 684
>Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical
protein T22B3.2a protein.
Length = 1032
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 260 CMITIFSNARADIFMSLKKCGSFSHGLAAR 171
C+I + + +DI+M++K+ HG+ ++
Sbjct: 652 CIIVVLQSKNSDIYMTVKEQSDIVHGIMSQ 681
>Z68300-4|CAA92619.1| 1035|Caenorhabditis elegans Hypothetical
protein T22B3.2b protein.
Length = 1035
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 260 CMITIFSNARADIFMSLKKCGSFSHGLAAR 171
C+I + + +DI+M++K+ HG+ ++
Sbjct: 655 CIIVVLQSKNSDIYMTVKEQSDIVHGIMSQ 684
>Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical
protein T22B3.2a protein.
Length = 1032
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 260 CMITIFSNARADIFMSLKKCGSFSHGLAAR 171
C+I + + +DI+M++K+ HG+ ++
Sbjct: 652 CIIVVLQSKNSDIYMTVKEQSDIVHGIMSQ 681
>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 260 CMITIFSNARADIFMSLKKCGSFSHGLAAR 171
C+I + + +DI+M++K+ HG+ ++
Sbjct: 657 CIIVVLQSKNSDIYMTVKEQSDIVHGIMSQ 686
>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 260 CMITIFSNARADIFMSLKKCGSFSHGLAAR 171
C+I + + +DI+M++K+ HG+ ++
Sbjct: 660 CIIVVLQSKNSDIYMTVKEQSDIVHGIMSQ 689
>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 260 CMITIFSNARADIFMSLKKCGSFSHGLAAR 171
C+I + + +DI+M++K+ HG+ ++
Sbjct: 657 CIIVVLQSKNSDIYMTVKEQSDIVHGIMSQ 686
>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 260 CMITIFSNARADIFMSLKKCGSFSHGLAAR 171
C+I + + +DI+M++K+ HG+ ++
Sbjct: 660 CIIVVLQSKNSDIYMTVKEQSDIVHGIMSQ 689
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 49 STSADAQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDI 171
S S D + S+ ++++ ETVSNV+ I ++K++QD+
Sbjct: 710 SESHDDRHSLEDMDVEVSSDGETVSNVEKIECMEEKKRQDL 750
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 49 STSADAQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDI 171
S S D + S+ ++++ ETVSNV+ I ++K++QD+
Sbjct: 710 SESHDDRHSLEDMDVEVSSDGETVSNVEKIECMEEKKRQDL 750
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,903
Number of Sequences: 27780
Number of extensions: 267693
Number of successful extensions: 703
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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