Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0610
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subun... 89 1e-18
At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subun... 88 3e-18
At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subun... 88 3e-18
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta... 43 1e-04
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 29 1.3
At3g08040.1 68416.m00982 MATE efflux family protein low similari... 29 1.7
At4g15730.1 68417.m02394 expressed protein 28 2.9
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro... 28 3.8
At4g12020.1 68417.m01912 protein kinase family protein similar t... 27 8.9
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 27 8.9
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 27 8.9
>At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subunit
5A (CSN5A) / c-JUN coactivator protein AJH2, putative
(AJH2) COP9 complex subunit CSN5-2; identical to c-Jun
coactivator protein AJH2 GI:3641312 from [Arabidopsis
thaliana]; identical to cDNA CSN complex subunit 5A
(CSN5A) GI:18056660; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 358
Score = 89.4 bits (212), Expect = 1e-18
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +3
Query: 198 PTFLQRHKDISSCIAEDGDHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVN 377
P + +R K + + + HARSGGT+E+MGL+ GK D +T+IVMD+FALPVEGTETRVN
Sbjct: 53 PHYFKRVKISALALLKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVN 112
Query: 378 AQAQXYEYMTAY 413
AQ YEYM Y
Sbjct: 113 AQDDAYEYMVEY 124
Score = 72.1 bits (169), Expect = 2e-13
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Frame = +1
Query: 64 AQASIAQKTWVMANNIETV----SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISA 231
+ ++IA+KTW + N+I TV S D+I+ YD Q KPWE DPH+FK +KISA
Sbjct: 4 SSSTIARKTWELENSILTVDSPDSTSDNIFYYDDTSQTRFQQEKPWENDPHYFKRVKISA 63
Query: 232 LALLKMVI 255
LALLKMV+
Sbjct: 64 LALLKMVV 71
Score = 32.7 bits (71), Expect = 0.13
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
EN +GWYHSHPG
Sbjct: 135 ENVVGWYHSHPG 146
>At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 351
Score = 88.2 bits (209), Expect = 3e-18
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQXYEYMTAYIEAA 425
HARSGGT+E+MGL+ GK + +T+IVMD+FALPVEGTETRVNAQ+ YEYM Y + +
Sbjct: 72 HARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVEYSQTS 128
Score = 66.1 bits (154), Expect = 1e-11
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Frame = +1
Query: 64 AQASIAQKTWVMANNI----ETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISA 231
+ ++IA+KTW + NNI T S D I+ YD Q I KPW DP++FK + ISA
Sbjct: 4 SSSAIARKTWELENNILPVEPTDSASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISA 63
Query: 232 LALLKMVI 255
LALLKMV+
Sbjct: 64 LALLKMVV 71
Score = 32.7 bits (71), Expect = 0.13
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
EN +GWYHSHPG
Sbjct: 135 ENVVGWYHSHPG 146
>At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 357
Score = 88.2 bits (209), Expect = 3e-18
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQXYEYMTAYIEAA 425
HARSGGT+E+MGL+ GK + +T+IVMD+FALPVEGTETRVNAQ+ YEYM Y + +
Sbjct: 72 HARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVEYSQTS 128
Score = 66.1 bits (154), Expect = 1e-11
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Frame = +1
Query: 64 AQASIAQKTWVMANNI----ETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISA 231
+ ++IA+KTW + NNI T S D I+ YD Q I KPW DP++FK + ISA
Sbjct: 4 SSSAIARKTWELENNILPVEPTDSASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISA 63
Query: 232 LALLKMVI 255
LALLKMV+
Sbjct: 64 LALLKMVV 71
Score = 32.7 bits (71), Expect = 0.13
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
EN +GWYHSHPG
Sbjct: 135 ENVVGWYHSHPG 146
>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
putative similar to 26S proteasome-associated pad1
homolog [Homo sapiens] GI:1923256, 26S proteasome,
non-ATPase subunit [Mus musculus] GI:2505940; contains
Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 308
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 255 HARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNA 380
H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 43 HGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEA 85
Score = 29.5 bits (63), Expect = 1.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 449 ENAIGWYHSHPG 484
E +GWYHSHPG
Sbjct: 105 EMVVGWYHSHPG 116
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 55 SADAQASIAQKTWVMANNIETVS-NVDDIYRYDKKQQ-QDILAAKPWEKDPHFFKDIKIS 228
S D + I K V N+E S ++ ++ R KK+ Q K WE D F + S
Sbjct: 368 SRDTETDIVLKGVVRVTNLEDASEHIGEVLRRVKKEHLQRAYKIKDWEDDHDFLLQLCKS 427
Query: 229 ALALLK 246
+ LLK
Sbjct: 428 SGKLLK 433
>At3g08040.1 68416.m00982 MATE efflux family protein low similarity
to enhanced disease susceptibility 5 [Arabidopsis
thaliana] GI:16589070; contains TIGRfam profile:
TIGR00797: MATE efflux family protein, Pfam profile
PF01554 Uncharacterized membrane protein family
Length = 526
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 261 RSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQXYEYMTAYIEAAPA 431
R+ T ++GL+LG V A +I L V G + + ++Y++ APA
Sbjct: 169 RTASTAMILGLILGLVQAIFLIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAPA 225
>At4g15730.1 68417.m02394 expressed protein
Length = 1059
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 97 MANNIETVSNVDDIYRYDKKQQQDIL--AAKPWEKDPHFFKD 216
+ N IE SNV+D+ + +IL AAKP +PH FK+
Sbjct: 505 LPNPIEKKSNVEDL---SQGVSSNILVDAAKPMRSNPHIFKN 543
>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
protein
Length = 192
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 313 ASTLPSNSPMTSSVPPDLA*SPSSAMQELISLCL 212
AS PS SP+++S P + S SSA L + CL
Sbjct: 143 ASMPPSMSPLSNSASPYASASASSAASSLPTACL 176
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 31 LSHTMASTSADAQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEK 195
++ S ADA ++ V+ V N+DD YR+ +K Q ++ P+ +
Sbjct: 608 ITEVQVSELADASDRTVREPRVIFQTTSEVDNLDDGYRW-RKYGQKVVKGNPYPR 661
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 364 SVPSTGSANESITIIVFASTLPSNSPMTSSVPPDLA*SPSSAMQELIS 221
S PS+ SAN T+ ++ +PS SVP SP A + IS
Sbjct: 165 SKPSSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAIS 212
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 364 SVPSTGSANESITIIVFASTLPSNSPMTSSVPPDLA*SPSSAMQELIS 221
S PS+ SAN T+ ++ +PS SVP SP A + IS
Sbjct: 164 SKPSSASANAPPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAIS 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,232,712
Number of Sequences: 28952
Number of extensions: 247530
Number of successful extensions: 620
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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