Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0599
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    29   0.63 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   3.4  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    25   7.8  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   7.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   7.8  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 301 KTTNLRPPXTSANRRHLEPEDPV 369
           KT N+R P TS    H++P++P+
Sbjct: 819 KTNNMRDPLTSTIFLHIQPKEPI 841


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 120 LDNF-LFSNFTRLHADHVDSAIENCQKFNFNAKIL 19
           + NF LF N+T    D +DS +  C+  +F   IL
Sbjct: 532 ISNFVLFDNYTSTLKDPIDSILSFCKLNDFQESIL 566


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 179 SPASRSVSGPALAPFRSPVSWTTSSLATSLDSMLIT*TLRSKIAKNLILMQRF 21
           SP   SVS P+L+ ++   S   +S  T   S + T     K  +N     RF
Sbjct: 229 SPDLASVSSPSLSSYKGAQSPNANSKRTKATSAIRTAAEEDKRRRNTAASARF 281


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = +1

Query: 79  SMESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQ 219
           S  SS  ++EEV+ +T +   + +   +  E+ E    ++++EE+ +
Sbjct: 115 SESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKE 161


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 191 TPEDSPASRSVSGPALAPFRSPVSWTTSSLATSLDSML 78
           TP +S +  S+   +  P  S +  TTSS++  + S+L
Sbjct: 112 TPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,113
Number of Sequences: 5004
Number of extensions: 28371
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)