Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0599
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193     28   6.0  
06_03_1009 - 26877888-26877943,26878398-26878854                       27   8.0  
02_02_0607 - 12088810-12089105,12089200-12090208                       27   8.0  

>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
          Length = 516

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 179 SPASRSVSGPALAPFRSPVSWTTSSLATSL 90
           SPA+   +GPA +P  SP   T+++ A SL
Sbjct: 54  SPAAAPPTGPASSPAASPALQTSAAAAASL 83


>06_03_1009 - 26877888-26877943,26878398-26878854
          Length = 170

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 115 VQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQD 222
           V E G    A  G  T  EAG SS  + +  EEA D
Sbjct: 43  VVEGGGAASAAGGASTSEEAGSSSSAMARRMEEAID 78


>02_02_0607 - 12088810-12089105,12089200-12090208
          Length = 434

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 161 VSGPALAPFRSPVSWTTSSLATSLDSML 78
           VS P  AP+R PV W T S   + D  L
Sbjct: 267 VSPPPAAPWRCPVRWGTPSKEATSDPAL 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,708,740
Number of Sequences: 37544
Number of extensions: 195232
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)