Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0599
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48649| Best HMM Match : DUF809 (HMM E-Value=1.3)                    29   2.0  
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)              29   2.7  
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_47462| Best HMM Match : Ras (HMM E-Value=0)                         27   8.2  

>SB_48649| Best HMM Match : DUF809 (HMM E-Value=1.3)
          Length = 222

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 85  ESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQ 219
           E  E A+EEVV+     N  +AG     + G  SG  ++ E++A+
Sbjct: 117 EEEEEAEEEVVKREVIGNDKRAGEKNKDDGGNKSGEEVKAEQDAE 161


>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
          Length = 1452

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 82   MESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQDD 225
            +++ E  K E   + GD+   K  P+ +REA E   V+I+     +DD
Sbjct: 1271 VKTKEAEKAEAKAKVGDVPMEKCAPEQEREATEDD-VIIEAVSPDEDD 1317


>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 175 LPRGRCLGPPWRRL--GRPSPGQLPL*QLHSTPC*SRRLCDRKLP 47
           LP GR    P RRL  GR   G+LP  +L S    SRRL  R+LP
Sbjct: 48  LPSGRL---PSRRLPSGRLPSGRLPSRRLPSRRLPSRRLPSRRLP 89


>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1551

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 88  SSEVAKEEVVQETGD-LNGAKAG--PDTDREAGESSGVLIQLEEEAQDDL 228
           ++E+ +E   +E  D + G + G  PD   EA   S V +  +EEA D+L
Sbjct: 568 AAELKEESSSEEEPDFVYGRQVGYAPDEKEEASSESDVSLDQQEEASDEL 617


>SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 88  SSEVAKEEVVQETGD-LNGAKAG--PDTDREAGESSGVLIQLEEEAQDDL 228
           ++E+ +E   +E  D + G + G  PD   EA   S V +  +EEA D+L
Sbjct: 195 AAELKEESSSEEEPDFVYGRQVGYAPDEKEEASSESDVSLDQQEEASDEL 244


>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
          Length = 385

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = -3

Query: 198 NEYSG--GLSCLAVGVWARL 145
           N+Y    GLS LAVG+WAR+
Sbjct: 181 NDYENLMGLSVLAVGIWARI 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,735
Number of Sequences: 59808
Number of extensions: 220901
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)