Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0599
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-5|AAG23374.1|  264|Caenorhabditis elegans Hypothetical ...    31   0.44 
U39996-4|AAA81090.2|  266|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81114-4|CAB03288.2|  688|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AY652944-1|AAT73711.1|  688|Caenorhabditis elegans guanylate cyc...    29   3.1  
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    28   4.1  
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    28   4.1  
Z73971-2|CAA98252.1|  273|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical...    27   9.5  

>AC025724-5|AAG23374.1|  264|Caenorhabditis elegans Hypothetical
           protein Y67D8C.6 protein.
          Length = 264

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -1

Query: 188 PEDSPASRSVSG-PALAPFRSPVSWTTSSLA 99
           P +SP SRSVS   +L+ FRSPVS T+  L+
Sbjct: 2   PRNSPPSRSVSSLSSLSTFRSPVSSTSGYLS 32


>U39996-4|AAA81090.2|  266|Caenorhabditis elegans Hypothetical
           protein C56E6.2 protein.
          Length = 266

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/78 (23%), Positives = 30/78 (38%)
 Frame = +1

Query: 58  DRRVYVISMESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQDDLXXX 237
           D  VY+I  ++  V K EV +  G    AK        + +   +   +  E  DD+   
Sbjct: 162 DANVYLIGNKTDLVEKREVTEAEGKAMAAKINAKFFELSNDQPNLFAAILSELSDDVLQS 221

Query: 238 XXXXXXXXXXAQLLKKER 291
                      QL++KE+
Sbjct: 222 RQESSEKKTDLQLIRKEK 239


>Z81114-4|CAB03288.2|  688|Caenorhabditis elegans Hypothetical
           protein T04D3.4 protein.
          Length = 688

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 31  IKIKFLAIFDRRVYVIS-MESSEVAKEEVVQETGDLNGAKAGP 156
           IK+    +F   V V + MES+ +  +  V ETG LNG KA P
Sbjct: 533 IKMPRYCLFGDTVNVANKMESNGIQCKIHVSETGKLNGLKANP 575


>AY652944-1|AAT73711.1|  688|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 688

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 31  IKIKFLAIFDRRVYVIS-MESSEVAKEEVVQETGDLNGAKAGP 156
           IK+    +F   V V + MES+ +  +  V ETG LNG KA P
Sbjct: 533 IKMPRYCLFGDTVNVANKMESNGIQCKIHVSETGKLNGLKANP 575


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 85  ESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQ 219
           E  E + EE  + +G+ +G  +G  +   +GESSG    +EE+ Q
Sbjct: 358 ECQETSGEESGEASGEQSGEGSGEASGEASGESSGEGSGVEEQNQ 402


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 85  ESSEVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQ 219
           E  E + EE  + +G+ +G  +G  +   +GESSG    +EE+ Q
Sbjct: 358 ECQETSGEESGEASGEQSGEGSGEASGEASGESSGEGSGVEEQNQ 402


>Z73971-2|CAA98252.1|  273|Caenorhabditis elegans Hypothetical
           protein C50H2.4 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 255 DHFTFSGSSEVILCFLF*LNEYSGGLSCLAVGVW 154
           DH    G  + ILCFL    +YS GL+ LA G +
Sbjct: 60  DHIQILGKLQAILCFL--NLKYSDGLTILAHGFY 91


>AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical
           protein F45C12.15 protein.
          Length = 543

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 94  EVAKEEVVQETGDLNGAKAGPDTDREAGESSGVLIQLEEEAQD 222
           EVA++EVVQ+  D  G+      D+E  E S V+ +     Q+
Sbjct: 281 EVAQQEVVQQDQDGPGSHQEVAQDQEIAEQSAVVAKTSIVVQE 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,135,315
Number of Sequences: 27780
Number of extensions: 169450
Number of successful extensions: 545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)