Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0599
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +3

Query: 198 SARRGSTR*PQNYPKT*NDLNKNGAVIKKGKKSVQNDEPPTAXDEREPATP*TRGSCSRG 377
           S+R    R  Q Y +  N    NG  +K     + N  PP++  E E     T+ S S  
Sbjct: 493 SSRINIERMKQVYQQL-NKYRGNGVSLKGETVGLLNALPPSSMKETEEEKKKTKQSLSPS 551

Query: 378 XQRLKM 395
             + KM
Sbjct: 552 ENQSKM 557


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 175 LPRGRCLGPP 146
           +PR RC+GPP
Sbjct: 145 VPRFRCIGPP 154


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 164  SVSGPALAPFRSPVSWTTSSLATSLDSMLIT*TLRSKIAKNL 39
            + S P L    SP    TSS   SL    +    R  IAK++
Sbjct: 914  AASSPGLLERASPAFSGTSSPTNSLVGKTVAVNFRDVIAKSI 955


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 57  ENCQKFNFNAKILQK 13
           E C  F FN+++LQK
Sbjct: 164 EMCPYFFFNSEVLQK 178


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 57  ENCQKFNFNAKILQK 13
           E C  F FN+++LQK
Sbjct: 164 EMCPYFFFNSEVLQK 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,139
Number of Sequences: 438
Number of extensions: 2095
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)