Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0599
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19330.2 68418.m02304 armadillo/beta-catenin repeat family pr...    33   0.18 
At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99...    29   2.9  

>At5g19330.2 68418.m02304 armadillo/beta-catenin repeat family
           protein / BTB/POZ domain-containing protein contains
           armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
           BTB/POZ domain, Pfam:PF00651
          Length = 636

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 49  AIFDRRVYVISMESSEVAKEEVVQETGDLNGAKAGPDTDREAGE-SSGVLIQLEEEAQD 222
           A+ DR +  +S +  +    EV  +   LN A +  ++DR A + ++ VL +L + A+D
Sbjct: 29  AVEDREISAVSTDGGQALLSEVAAQVSVLNSAFSWQESDRAAAKRATQVLAELAKNAED 87


>At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 367

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 126 RLLDNFLFSNFTRLHADHVDSA 61
           R  DNF F NFT++ ++H D+A
Sbjct: 225 REFDNFQFVNFTKIMSEHKDAA 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,489,275
Number of Sequences: 28952
Number of extensions: 154725
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)