Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0596
         (408 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    27   0.094
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   4.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   4.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   8.1  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    20   8.1  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    20   8.1  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 314 VXGCIVDANLSVLALCYC 367
           + GC++  N  V A CYC
Sbjct: 539 IIGCLIQFNTIVFAFCYC 556



 Score = 25.4 bits (53), Expect = 0.22
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 314 VXGCIVDANLSVLALCYC 367
           + GC++  N  V + CYC
Sbjct: 258 IIGCLIQFNTIVFSFCYC 275


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 221 GRPDKQPXSSSVSKGHSCYRPRRDGERKRKSVXGCIV 331
           GR D  P S +     SC   ++ G   R+    C+V
Sbjct: 154 GREDLSPSSLNGYSADSCDSKKKKGPTPRQQEELCLV 190


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 318 VDVLLTPISRSWLFVIVRXGAQEXYWI 398
           VD L+T     + F++     Q+ YW+
Sbjct: 318 VDSLVTYAGERFDFIVTADQPQDVYWM 344


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 212 DETGRPDKQPXSSSVSKG 265
           D    PD +P SSS+S G
Sbjct: 65  DGASTPDVRPPSSSLSYG 82


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 212 DETGRPDKQPXSSSVSKG 265
           D    PD +P SSS+S G
Sbjct: 221 DGASTPDVRPPSSSLSYG 238


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 233 KQPXSSSVSKGHSCYR 280
           +Q      SKG SCYR
Sbjct: 302 RQMYDRGESKGSSCYR 317


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 27  MKLNVSYPATGCQKLFEVXDEHKLRI 104
           M ++   P+TG Q + +V   HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 27  MKLNVSYPATGCQKLFEVXDEHKLRI 104
           M ++   P+TG Q + +V   HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,672
Number of Sequences: 336
Number of extensions: 1663
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)