Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0596
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   111   3e-26
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   111   4e-26
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   4.5  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   4.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   6.0  
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces...    24   7.9  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    24   7.9  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    24   7.9  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  111 bits (268), Expect = 3e-26
 Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
 Frame = +3

Query: 27  MKLNVSYPATGCQKLFEVXDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVXGGNDKQG 206
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 207 FPMKQGVLTNSRVRLLCQRATHVTDRAAMERENVNQXVDVLLTPISRSWL-FVIVRXGAQ 383
           FPM QGVL   RVRLL  RA H   R   + E   + V   +     + L   IV+ G Q
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQ 119

Query: 384 E 386
           +
Sbjct: 120 D 120


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  111 bits (267), Expect = 4e-26
 Identities = 55/98 (56%), Positives = 66/98 (67%)
 Frame = +3

Query: 27  MKLNVSYPATGCQKLFEVXDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVXGGNDKQG 206
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 207 FPMKQGVLTNSRVRLLCQRATHVTDRAAMERENVNQXV 320
           FPM QGVL   RVRLL  RA H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 27/38 (71%), Positives = 29/38 (76%)
 Frame = +2

Query: 263 GHSCYRPRRDGERKRKSVXGCIVDANLSVLALCYCAXG 376
           GH CYRPRRDGERKRKSV GCIV  +L+VLAL     G
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQG 117


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 47  PGNGMPEVVRSGGRAQASYLLR 112
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 212 DETGRPDKQPXSSSVSKGHSCYRPRRDGERKRKSVXGCIVD 334
           +E    D  P     SK +S  +P+  G  KRK+    +VD
Sbjct: 85  EEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVD 125


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 222  PVSSGILACRCRXRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS 64
            P+SS I        H  H+P  +   D+    R C F++ +E   + P +  S
Sbjct: 970  PISSNIPILSVAPFHAHHAPQGYIYVDENSFIRICKFQEDFEYDNKWPYKKVS 1022


>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -1

Query: 306 RFLSPSRRGL*HEWPFDTEDEXGCLSGRPVSSGILACRCRXRHEVHSPSIHRLTDQ 139
           RFL+       HEW  +T+      S  P+  G +  +   +  + S  +   TDQ
Sbjct: 125 RFLNEENEAFGHEWLRETDVVRAVDSLAPLGPGFVLEKIAGKQYIRSLPLELNTDQ 180


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 23  SHEVKRFVPGNGMPEV 70
           SH ++R++P N  PEV
Sbjct: 553 SHHLQRYIPKNWFPEV 568


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = +3

Query: 153 DEWKGYVLRVXGGNDKQGFPMKQGV------LTNSRVRLLC 257
           D  KG+V++  GG     FP+K  V      L+  RV L+C
Sbjct: 10  DPSKGWVVQKFGGTSVGKFPIKIAVDVAKEYLSTKRVALVC 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,469
Number of Sequences: 5004
Number of extensions: 26623
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)