Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0596
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 114 3e-26
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 111 2e-25
02_01_0428 - 3127098-3129254 28 3.3
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 28 3.3
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 4.3
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 5.7
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 27 7.6
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 27 7.6
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 27 7.6
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 114 bits (274), Expect = 3e-26
Identities = 50/81 (61%), Positives = 61/81 (75%)
Frame = +3
Query: 27 MKLNVSYPATGCQKLFEVXDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVXGGNDKQG 206
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 207 FPMKQGVLTNSRVRLLCQRAT 269
FPMKQGVLT+ RVRLL R T
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGT 81
Score = 44.4 bits (100), Expect = 4e-05
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Frame = +2
Query: 212 DETGRPDKQPXSSS------VSKGHSCYRP--RRDGERKRKSVXGCIVDANLSVLALCYC 367
D+ G P KQ +S + +G C+R RRDGER+RKSV GCIV +LSV+ L
Sbjct: 57 DKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIV 116
Query: 368 AXG 376
G
Sbjct: 117 KKG 119
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 111 bits (267), Expect = 2e-25
Identities = 49/81 (60%), Positives = 60/81 (74%)
Frame = +3
Query: 27 MKLNVSYPATGCQKLFEVXDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVXGGNDKQG 206
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 207 FPMKQGVLTNSRVRLLCQRAT 269
FPMKQGVLT RVRLL R T
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGT 81
Score = 43.6 bits (98), Expect = 6e-05
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +2
Query: 260 KGHSCYRP--RRDGERKRKSVXGCIVDANLSVLALCYCAXG 376
+G C+R RRDGER+RKSV GCIV +LSV+ L G
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
>02_01_0428 - 3127098-3129254
Length = 718
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 261 FDTEDEXGCLSGRPVSSGILACRCRXRHEVHSPSIHRLTDQ 139
FDT D + + G+L+ C VH+P+ TDQ
Sbjct: 644 FDTFDNSSFIGNPKLCGGMLSHHCNSAKAVHAPASTLSTDQ 684
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 63 QKLF-EVXDEHKLRIFYEKRMGAEVEADQLG 152
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 90 HKL-RIFYEKRMGAEVEADQLGDEWKGYVLRVXGGNDKQGFPMKQGVLTNSRVRLLCQRA 266
HKL + Y +M +EVE D +W+ Y ++ G K PM++ + T ++ Q A
Sbjct: 190 HKLYKRAYHPKMISEVELD---GKWRQYKSKLKRGYYKPNLPMERVLQTVPKIVAKSQWA 246
Query: 267 THVT 278
T V+
Sbjct: 247 TLVS 250
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 116 LFVKDTKLVLVXHFEQLLASRCRVRNV*LHDCGQS 12
LF+ T V + F+ L RC V + LH C Q+
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQN 110
>07_01_0456 -
3461827-3462261,3462542-3462670,3462777-3462897,
3463004-3463086,3463087-3463124,3463219-3464153,
3464407-3464655,3464738-3465195,3465793-3465885,
3466402-3466650
Length = 929
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 239 PXSSSVSKGHSCYRPRRDGERKRKSVXGCIVDANLSVLALC 361
P SS GH C RR G+R I ++ V+ LC
Sbjct: 117 PSSSHPLIGHMCVTFRRTGDRFGMIPMSAIAACDVKVIGLC 157
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 9 TRLTAVMKLNVSYPATGCQKLFEVXDEHKLRIFYEKRMGAEV 134
TR+ ++M +++ + A+GC L E+ L +F K + A V
Sbjct: 60 TRMRSLMGVDIRFVASGCSALVEMNYLWVLNVFRYKVIKASV 101
>03_05_1091 +
30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 188 RQRQARIPDETGRPDKQPXSSSVSKGHSCYRPRRDGERKRKSVXGCIVDANLSVLAL 358
R QA+ P E R K ++ GH R D +R+R++ C +SVL L
Sbjct: 63 RAVQAKPPVEPPRRRKARDAADHDIGH-----RLDAKRRRRAASACTAQREVSVLTL 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,703,989
Number of Sequences: 37544
Number of extensions: 209336
Number of successful extensions: 614
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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