Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0596
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)               80   6e-16
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   34   0.039
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)                    29   1.5  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   1.9  
SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)                 27   5.9  
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)                   27   7.8  
SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6)              27   7.8  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score = 80.2 bits (189), Expect = 6e-16
 Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = +3

Query: 129 EVEADQLGDEWKGYVLRVXGGNDKQGFPMKQGVLTNSRVRLLCQRATHVTDRAAMERENV 308
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL  +  H   R     E  
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKG-HSCYRPRRTGERK 60

Query: 309 NQXVDVLLTPISRSWL-FVIVRXGAQE 386
            + V   +     S L  VIV+ G Q+
Sbjct: 61  RKSVRGCIVDSQLSVLSLVIVKKGEQD 87


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 254 QKTNXAVCQDALFHRESLLVVAAXDTKYIALPFIA*LISLYFGAHALFVK 105
           Q+ + A+  D L H +SL V+   D + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
          Length = 592

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 206 IPDETGRPDKQPXSSSVSKGHSCYRPRRDGERK 304
           + ++  +P KQ  +S V+ GH+ Y P +DGE +
Sbjct: 142 VQEKARKPTKQ--ASGVAHGHTYYEPLKDGESR 172


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 135 EADQLGDEWKGYVL--RVXGGNDKQGFPMK 218
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
          Length = 159

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 212 DETGRPDKQPXSSSVSKGHSC 274
           D TG P K P S++VSK + C
Sbjct: 102 DTTGNPRKPPQSATVSKCYRC 122


>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 212  DETGRPDKQPXSSSVSKGHSC 274
            D TG P K P S++VSK + C
Sbjct: 1232 DTTGNPRKPPQSATVSKCYRC 1252


>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
          Length = 1081

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 156 HRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLP 49
           H ++ + L RR  A R+   ACAR P   ++  P+P
Sbjct: 698 HFMSCKTLGRRSLASRRDARACARAPKMPSAHTPVP 733


>SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6)
          Length = 222

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 188 RQRQARIPDETGRPDKQPXSSSVSKGHSCYRPRRDGERKRKS 313
           R RQA     T +P  Q   ++  +   C RPR+   + + S
Sbjct: 58  RPRQASPKTNTSKPQDQVNQAASPRDKQCARPRQPSRKTKAS 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,223,946
Number of Sequences: 59808
Number of extensions: 243115
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)